Spencer Nystrom
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/memes |
| git_branch: master |
| git_last_commit: 137c56e |
| git_last_commit_date: 2022-02-03 19:34:40 -0400 (Thu, 03 Feb 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:57 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the memes package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/memes.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1086/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| memes 1.3.4 (landing page) Spencer Nystrom
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: memes |
| Version: 1.3.4 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:memes.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings memes_1.3.4.tar.gz |
| StartedAt: 2022-03-17 19:30:34 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 19:32:29 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 114.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: memes.Rcheck |
| Warnings: 0 |
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:memes.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings memes_1.3.4.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/memes.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'memes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'memes' version '1.3.4'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'memes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
add_sequence 6.07 0.23 6.31
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
memes.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL memes
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'memes' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'memes'
finding HTML links ... done
add_sequence html
ame_compare_heatmap_methods html
check_meme_install html
drop_best_match html
example_ame html
example_ame_large html
example_chip_summits html
example_dreme html
example_dreme_by_binding html
example_dreme_tomtom html
example_fimo html
example_peaks html
example_rnaseq html
example_tomtom html
force_best_match html
get_sequence html
has_duplicate_motifs html
importAme html
importDremeXML html
importFimo html
importMeme html
importStremeXML html
importTomTomXML html
meme_is_installed html
memes-package html
nest_tomtom html
plot_ame_heatmap html
plot_sequence_heatmap html
remove_duplicate_motifs html
runAme html
runDreme html
runFimo html
runMeme html
runStreme html
runTomTom html
update_best_match html
view_tomtom_hits html
write_fasta html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (memes)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'sesame' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'SingleCellSignalR' is missing or broken
done
memes.Rcheck/memes-Ex.timings
| name | user | system | elapsed | |
| add_sequence | 6.07 | 0.23 | 6.31 | |
| ame_compare_heatmap_methods | 0.91 | 0.06 | 0.97 | |
| check_meme_install | 0.39 | 0.06 | 0.45 | |
| drop_best_match | 0 | 0 | 0 | |
| example_ame | 0.03 | 0.04 | 0.06 | |
| example_ame_large | 0.04 | 0.00 | 0.05 | |
| force_best_match | 0.02 | 0.00 | 0.01 | |
| get_sequence | 0.44 | 0.11 | 0.97 | |
| has_duplicate_motifs | 0.2 | 0.0 | 0.2 | |
| importAme | 0.36 | 0.14 | 0.33 | |
| importDremeXML | 0.31 | 0.00 | 0.31 | |
| importFimo | 0.13 | 0.06 | 0.11 | |
| importMeme | 0.15 | 0.02 | 0.17 | |
| importStremeXML | 0.22 | 0.00 | 0.22 | |
| importTomTomXML | 0.42 | 0.02 | 0.44 | |
| meme_is_installed | 0.02 | 0.00 | 0.02 | |
| nest_tomtom | 0.02 | 0.00 | 0.01 | |
| plot_ame_heatmap | 0.32 | 0.00 | 0.33 | |
| plot_sequence_heatmap | 2.75 | 0.04 | 2.80 | |
| remove_duplicate_motifs | 0 | 0 | 0 | |
| runAme | 0.02 | 0.00 | 0.01 | |
| runDreme | 0.01 | 0.00 | 0.02 | |
| runFimo | 0.02 | 0.00 | 0.01 | |
| runMeme | 0.02 | 0.00 | 0.02 | |
| runTomTom | 0.01 | 0.00 | 0.01 | |
| update_best_match | 0.08 | 0.00 | 0.08 | |
| view_tomtom_hits | 0.72 | 0.02 | 0.74 | |
| write_fasta | 0 | 0 | 0 | |