Jiefei Wang
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/gpuMagic |
| git_branch: master |
| git_last_commit: 8199347 |
| git_last_commit_date: 2022-01-25 22:36:02 -0400 (Tue, 25 Jan 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:40 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the gpuMagic package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gpuMagic.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 817/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| gpuMagic 1.11.0 (landing page) Jiefei Wang
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: gpuMagic |
| Version: 1.11.0 |
| Command: chmod a+r gpuMagic -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gpuMagic |
| StartedAt: 2022-03-17 17:05:38 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 17:05:45 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 7.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r gpuMagic -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gpuMagic
###
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* checking for file 'gpuMagic/DESCRIPTION' ... OK
* preparing 'gpuMagic':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package 'gpuMagic' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c C_Interface.cpp -o C_Interface.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c R_functionRegistration.cpp -o R_functionRegistration.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c Tools.cpp -o Tools.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c kernelManager.cpp -o kernelManager.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -ID:/biocbuild/bbs-3.15-bioc/R/include -I../inst/include/OpenCL_header -DCL_TARGET_OPENCL_VERSION=220 -DCL_USE_DEPRECATED_OPENCL_1_2_APIS -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c openArray.cpp -o openArray.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o gpuMagic.dll tmp.def C_Interface.o R_functionRegistration.o Tools.o kernelManager.o openArray.o C:/Windows/SysWOW64/OpenCL.dll -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x3ca): undefined reference to `clGetEventInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x1234): undefined reference to `clEnqueueNDRangeKernel'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x139b): undefined reference to `clFlush'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x2015): undefined reference to `clSetKernelArg'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x2599): undefined reference to `clGetKernelWorkGroupInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: C_Interface.o:C_Interface.cpp:(.text+0x2b10): undefined reference to `clSetKernelArg'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x2e): undefined reference to `clGetPlatformIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x106): undefined reference to `clGetPlatformIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x163): undefined reference to `clGetPlatformIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x1c2): undefined reference to `clGetDeviceIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x25c): undefined reference to `clGetDeviceIDs'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x313): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x3c7): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x40a): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x432): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x45c): undefined reference to `clGetDeviceInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x484): more undefined references to `clGetDeviceInfo' follow
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x73e): undefined reference to `clCreateContext'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x79c): undefined reference to `clCreateCommandQueue'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x15cc): undefined reference to `clFlush'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x15d6): undefined reference to `clFinish'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x1615): undefined reference to `clReleaseKernel'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x1645): undefined reference to `clReleaseProgram'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x16ac): undefined reference to `clReleaseCommandQueue'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x16b8): undefined reference to `clReleaseContext'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x2367): undefined reference to `clCreateProgramWithSource'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x239e): undefined reference to `clBuildProgram'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x2866): undefined reference to `clGetProgramBuildInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x289e): undefined reference to `clGetProgramBuildInfo'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: kernelManager.o:kernelManager.cpp:(.text+0x35fd): undefined reference to `clCreateKernel'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0xe7): undefined reference to `clReleaseMemObject'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0x175): undefined reference to `clEnqueueReadBuffer'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0x385): undefined reference to `clCreateBuffer'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0x908): undefined reference to `clEnqueueFillBuffer'
C:/rtools40/mingw64/bin/../lib/gcc/x86_64-w64-mingw32/8.3.0/../../../../x86_64-w64-mingw32/bin/ld.exe: openArray.o:openArray.cpp:(.text+0xa58): undefined reference to `clCreateBuffer'
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'gpuMagic'
* removing 'D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpS2uZac/Rinst39b867544776/gpuMagic'
-----------------------------------
ERROR: package installation failed