Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:07:28 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the epivizrData package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epivizrData.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 601/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
epivizrData 1.23.0 (landing page) Hector Corrada Bravo
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: epivizrData |
Version: 1.23.0 |
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:epivizrData.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings epivizrData_1.23.0.tar.gz |
StartedAt: 2022-03-17 19:02:23 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 19:06:07 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 224.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: epivizrData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:epivizrData.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings epivizrData_1.23.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/epivizrData.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'epivizrData/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'epivizrData' version '1.23.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'epivizrData' can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData' See 'D:/biocbuild/bbs-3.15-bioc/meat/epivizrData.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See 'D:/biocbuild/bbs-3.15-bioc/meat/epivizrData.Rcheck/00check.log' for details.
epivizrData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL epivizrData ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'epivizrData' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData' ** help *** installing help indices converting help for package 'epivizrData' finding HTML links ... done EpivizBlockData-class html finding level-2 HTML links ... done EpivizBpData-class html EpivizData-class html EpivizDataMgr-class html EpivizFeatureData-class html EpivizGeneInfoData-class html EpivizMeasurement-class html SparseEpivizMeasurement-class html ahToMySQL html as.data.frame-EpivizData-method html as.list-EpivizMeasurement-method html as.list-SparseEpivizMeasurement-method html createMgr html dot-emptyEpivizMeasurement html dot-emptyEpivizSparseMeasurement html epivizrData html register html show-EpivizMeasurement-method html show-SparseEpivizMeasurement-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData' ** testing if installed package can be loaded from final location Warning: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData' ** testing if installed package keeps a record of temporary installation path * DONE (epivizrData) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'NxtIRFcore' is missing or broken done
epivizrData.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(epivizrData) Loading required package: epivizrServer Loading required package: Biobase Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Warning message: replacing previous import 'GenomicFeatures::proteinToGenome' by 'ensembldb::proteinToGenome' when loading 'epivizrData' > > test_check("epivizrData") [ FAIL 0 | WARN 0 | SKIP 3 | PASS 101 ] == Skipped tests =============================================================== * On CRAN (3) [ FAIL 0 | WARN 0 | SKIP 3 | PASS 101 ] > > proc.time() user system elapsed 16.75 1.00 17.73
epivizrData.Rcheck/epivizrData-Ex.timings
name | user | system | elapsed | |
ahToMySQL | 0 | 0 | 0 | |
createMgr | 0.05 | 0.00 | 0.05 | |
register | 0.28 | 0.00 | 0.28 | |