Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:07:17 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for crossmeta on riesling1


To the developers/maintainers of the crossmeta package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/crossmeta.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 426/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
crossmeta 1.21.0  (landing page)
Alex Pickering
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/crossmeta
git_branch: master
git_last_commit: 9161035
git_last_commit_date: 2021-10-26 12:28:29 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: crossmeta
Version: 1.21.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL crossmeta
StartedAt: 2022-03-17 16:15:31 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:17:19 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 108.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL crossmeta
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'crossmeta' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'crossmeta'
    finding HTML links ... done
    addContrastInput                        html  
    add_adjusted                            html  
    add_sources                             html  
    add_vsd                                 html  
    bulkAnnot                               html  
    bulkAnnotInput                          html  
    bulkForm                                html  
    bulkFormInput                           html  
    bulkPage                                html  
    bulkPageUI                              html  
    bulkTable                               html  
    bulkTableOuput                          html  
    ch2_subset                              html  
    clean_y                                 html  
    delContrastsInput                       html  
    diff_expr                               html  
    es_meta                                 html  
    exprs.MA                                html  
    filter_genes                            html  
    fit_ebayes                              html  
    fit_lm                                  html  
    fix_illum_headers                       html  
    finding level-2 HTML links ... done

    format_dl_annot                         html  
    format_up_annot                         html  
    get_ch2_mod                             html  
    get_group_levels                        html  
    get_palette                             html  
    get_raw                                 html  
    get_sva_mods                            html  
    get_top_table                           html  
    get_vsd                                 html  
    gs.names                                html  
    gslist                                  html  
    ilmn.nnum                               html  
    iqr_replicates                          html  
    is_invertible                           html  
    load_agil_plat                          html  
    load_diff                               html  
    load_illum_plat                         html  
    load_plat                               html  
    load_raw                                html  
    match_prev_eset                         html  
    open_raw_illum                          html  
    phenoData.ch2                           html  
    prefix_illum_headers                    html  
    query_ref                               html  
    remove_autonamed                        html  
    run_limma                               html  
    run_limma_setup                         html  
    run_lmfit                               html  
    run_select_contrasts                    html  
    run_sva                                 html  
    setup_prev                              html  
    symbol_annot                            html  
    to_eset                                 html  
    to_ma                                   html  
    validate_up_annot                       html  
    which_max_iqr                           html  
    xls_to_txt                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (crossmeta)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'iCheck' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'tripr' is missing or broken
 done