##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL cancerclass
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’
* installing *source* package ‘cancerclass’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c copa.c -o copa.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c cor.c -o cor.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c fc.c -o fc.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c help.c -o help.o
help.c: In function ‘welch_df’:
help.c:263:19: warning: variable ‘mean2’ set but not used [-Wunused-but-set-variable]
  263 |     double mean1, mean2, var1, var2 = 0.0;
      |                   ^~~~~
help.c:263:12: warning: variable ‘mean1’ set but not used [-Wunused-but-set-variable]
  263 |     double mean1, mean2, var1, var2 = 0.0;
      |            ^~~~~
help.c: In function ‘bsortdesc’:
help.c:344:13: warning: variable ‘anzahl’ set but not used [-Wunused-but-set-variable]
  344 |     int i,k,anzahl=0;
      |             ^~~~~~
help.c: In function ‘bsort’:
help.c:368:13: warning: variable ‘anzahl’ set but not used [-Wunused-but-set-variable]
  368 |     int i,k,anzahl=0;
      |             ^~~~~~
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c ort.c -o ort.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c os.c -o os.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c shift.c -o shift.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c statistics.c -o statistics.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c student.c -o student.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c throw.c -o throw.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c welch.c -o welch.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -Wall -c wilcox.c -o wilcox.o
wilcox.c: In function ‘wilcoxon’:
wilcox.c:37:8: warning: variable ‘overall’ set but not used [-Wunused-but-set-variable]
   37 |    int overall = 0;
      |        ^~~~~~~
wilcox.c: In function ‘pwilcoxon’:
wilcox.c:75:8: warning: variable ‘overall’ set but not used [-Wunused-but-set-variable]
   75 |    int overall = 0;
      |        ^~~~~~~
gcc -shared -L/home/biocbuild/bbs-3.15-bioc/R/lib -L/usr/local/lib -o cancerclass.so copa.o cor.o fc.o help.o ort.o os.o shift.o statistics.o student.o throw.o welch.o wilcox.o -L/home/biocbuild/bbs-3.15-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.15-bioc/R/library/00LOCK-cancerclass/00new/cancerclass/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cancerclass)