Michael Lawrence
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/biovizBase |
| git_branch: master |
| git_last_commit: d459e88 |
| git_last_commit_date: 2021-11-17 08:55:41 -0400 (Wed, 17 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:03 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the biovizBase package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biovizBase.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 194/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biovizBase 1.43.1 (landing page) Michael Lawrence
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: biovizBase |
| Version: 1.43.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL biovizBase |
| StartedAt: 2022-03-17 16:12:56 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 16:14:07 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 71.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL biovizBase
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'biovizBase' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c R_init_biovizBase.c -o R_init_biovizBase.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c bin_offsets.c -o bin_offsets.o
bin_offsets.c: In function 'scan_bam_bin_offsets':
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness [-Wpointer-sign]
if (strncmp(b, "BAI\1", 4))
^
In file included from D:/biocbuild/bbs-3.15-bioc/R/include/R_ext/RS.h:34,
from D:/biocbuild/bbs-3.15-bioc/R/include/Rdefines.h:38,
from bin_offsets.h:1,
from bin_offsets.c:3:
C:/rtools40/mingw64/x86_64-w64-mingw32/include/string.h:86:15: note: expected 'const char *' but argument is of type 'Rbyte *' {aka 'unsigned char *'}
int __cdecl strncmp(const char *_Str1,const char *_Str2,size_t _MaxCount);
^~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o biovizBase.dll tmp.def R_init_biovizBase.o bin_offsets.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-biovizBase/00new/biovizBase/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'biovizBase'
finding HTML links ... done
CRC html
GCcontent html
addStepping-method html
aes-utils html
biovizBase-package html
colorBlindSafePal html
containLetters html
crc1.GeRL html
crunch-method html
darned_hg19_subset500 html
estimateCoverage-method html
flatGrl html
genesymbol html
getBioColor html
getFormalNames html
getGaps html
getIdeoGR html
getIdeogram html
getScale html
hg19Ideogram html
hg19IdeogramCyto html
ideo html
ideoCyto html
isIdeogram html
isMatchedWithModel html
isSimpleIdeogram html
labs html
maxGap-method html
mold-method html
finding level-2 HTML links ... done
pileupAsGRanges html
pileupGRangesAsVariantTable html
plotColorLegend html
scale html
showColor html
shrinkageFun-method html
splitByFacets-method html
strip_formula_dots html
subsetArgsByFormals html
transform html
transformGRangesForEvenSpace html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biovizBase)
Making 'packages.html' ... done