Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:07:01 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the bigPint package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bigPint.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 147/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
bigPint 1.11.0 (landing page) Lindsay Rutter
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: bigPint |
Version: 1.11.0 |
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:bigPint.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings bigPint_1.11.0.tar.gz |
StartedAt: 2022-03-17 18:31:43 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 18:35:22 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 219.8 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: bigPint.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:bigPint.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings bigPint_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/bigPint.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'bigPint/DESCRIPTION' ... OK * this is package 'bigPint' version '1.11.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'bigPint' can be installed ... OK * checking installed package size ... NOTE installed size is 22.6Mb sub-directories of 1Mb or more: data 11.0Mb help 3.2Mb shiny-dashboards 5.0Mb shiny-examples 3.1Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... WARNING LazyData DB of 11.0 MB without LazyDataCompression set See ยง1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotSM 40.21 0.66 40.86 plotClusters 14.47 1.19 15.89 plotLitre 4.36 1.53 5.96 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/bigPint.Rcheck/00check.log' for details.
bigPint.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL bigPint ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'bigPint' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bigPint' finding HTML links ... done bigPint html convertSEPair html convertSESubsetGenes html plotClusters html plotLitre html plotLitreApp html plotPCP html plotPCPApp html plotSM html plotSMApp html plotVolcano html plotVolcanoApp html se_soybean_cn_sub html se_soybean_ir_sub html soybean_cn html soybean_cn_metrics html soybean_cn_sub html soybean_cn_sub_metrics html soybean_ir html soybean_ir_metrics html soybean_ir_sub html soybean_ir_sub_metrics html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bigPint) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'receptLoss' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'ttgsea' is missing or broken done
bigPint.Rcheck/tests/runTests.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage("bigPint") RUNIT TEST PROTOCOL -- Thu Mar 17 18:35:13 2022 *********************************************** Number of test functions: 5 Number of errors: 0 Number of failures: 0 1 Test Suite : bigPint RUnit Tests - 5 test functions, 0 errors, 0 failures Number of test functions: 5 Number of errors: 0 Number of failures: 0 Warning messages: 1: In xtfrm.data.frame(x) : cannot xtfrm data frames 2: In xtfrm.data.frame(x) : cannot xtfrm data frames 3: In xtfrm.data.frame(x) : cannot xtfrm data frames 4: In xtfrm.data.frame(x) : cannot xtfrm data frames 5: In xtfrm.data.frame(x) : cannot xtfrm data frames 6: In xtfrm.data.frame(x) : cannot xtfrm data frames 7: In xtfrm.data.frame(x) : cannot xtfrm data frames 8: In xtfrm.data.frame(x) : cannot xtfrm data frames > > proc.time() user system elapsed 5.89 0.57 6.43
bigPint.Rcheck/bigPint-Ex.timings
name | user | system | elapsed | |
convertSEPair | 0.18 | 0.00 | 0.18 | |
convertSESubsetGenes | 0.35 | 0.03 | 0.38 | |
plotClusters | 14.47 | 1.19 | 15.89 | |
plotLitre | 4.36 | 1.53 | 5.96 | |
plotLitreApp | 0.05 | 0.00 | 0.04 | |
plotPCP | 1.18 | 0.13 | 1.32 | |
plotPCPApp | 0.61 | 0.01 | 0.62 | |
plotSM | 40.21 | 0.66 | 40.86 | |
plotSMApp | 0.01 | 0.00 | 0.02 | |
plotVolcano | 1.24 | 0.08 | 1.31 | |
plotVolcanoApp | 0.08 | 0.00 | 0.08 | |