Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:06:55 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the anota2seq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/anota2seq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 65/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
anota2seq 1.17.0 (landing page) Christian Oertlin
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
Package: anota2seq |
Version: 1.17.0 |
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:anota2seq.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings anota2seq_1.17.0.tar.gz |
StartedAt: 2022-03-17 18:26:46 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 18:30:30 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 223.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: anota2seq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:anota2seq.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings anota2seq_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/anota2seq.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'anota2seq/DESCRIPTION' ... OK * this is package 'anota2seq' version '1.17.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'anota2seq' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed anota2seqGetQualityControl 28.83 0.07 28.91 anota2seqGetResidOutlierTest 25.37 0.10 25.50 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
anota2seq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL anota2seq ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'anota2seq' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'anota2seq' finding HTML links ... done Anota2seqDataSet-class html anota2seq-plots html anota2seqAnalyze html anota2seqDataSetFromMatrix html anota2seqGetContrasts html anota2seqGetCovariates html anota2seqGetDeltaData html anota2seqGetNormalizedData html anota2seqGetOutput html anota2seqGetQualityControl html anota2seqGetResidOutlierTest html anota2seqGetThresholds html anota2seqPerformQC html anota2seqRegModes html anota2seqResidOutlierTest html anota2seqRun html anota2seqSelSigGenes html anota2seq_data html show-Anota2seqDataSet-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (anota2seq) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'imageHTS' is missing or broken done
anota2seq.Rcheck/anota2seq-Ex.timings
name | user | system | elapsed | |
anota2seq-plots | 0 | 0 | 0 | |
anota2seqAnalyze | 0.80 | 0.12 | 0.92 | |
anota2seqDataSetFromMatrix | 0.05 | 0.00 | 0.04 | |
anota2seqGetContrasts | 0.36 | 0.02 | 0.38 | |
anota2seqGetCovariates | 0.47 | 0.00 | 0.47 | |
anota2seqGetDeltaData | 0.39 | 0.01 | 0.40 | |
anota2seqGetNormalizedData | 0.03 | 0.00 | 0.03 | |
anota2seqGetOutput | 0.33 | 0.04 | 0.36 | |
anota2seqGetQualityControl | 28.83 | 0.07 | 28.91 | |
anota2seqGetResidOutlierTest | 25.37 | 0.10 | 25.50 | |
anota2seqGetThresholds | 0.38 | 0.04 | 0.42 | |
anota2seqPerformQC | 0 | 0 | 0 | |
anota2seqRegModes | 0.98 | 0.07 | 1.06 | |
anota2seqResidOutlierTest | 0 | 0 | 0 | |
anota2seqRun | 0.97 | 0.01 | 1.00 | |
anota2seqSelSigGenes | 0.36 | 0.00 | 0.36 | |
anota2seq_data | 0.01 | 0.00 | 0.02 | |
show-Anota2seqDataSet-method | 0.13 | 0.00 | 0.12 | |