Eivind Valen
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/amplican |
| git_branch: master |
| git_last_commit: 5b0baca |
| git_last_commit_date: 2021-11-19 04:13:23 -0400 (Fri, 19 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:06:55 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the amplican package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/amplican.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 48/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| amplican 1.17.1 (landing page) Eivind Valen
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: amplican |
| Version: 1.17.1 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL amplican |
| StartedAt: 2022-03-17 15:51:50 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 15:52:55 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 65.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL amplican
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'amplican' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c bezier.cpp -o bezier.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o amplican.dll tmp.def RcppExports.o bezier.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-amplican/00new/amplican/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'amplican'
finding HTML links ... done
AlignmentsExperimentSet-class html
finding level-2 HTML links ... done
alphabetQuality html
amplican html
amplicanAlign html
amplicanConsensus html
amplicanFilter html
amplicanMap html
amplicanNormalize html
amplicanOverlap html
amplicanPipeline html
amplicanPipelineConservative html
amplicanReport html
amplicanSummarize html
amplican_print_reads html
assignedCount html
barcodeData-set html
barcodeData html
checkConfigFile html
checkFileWriteAccess html
checkPrimers html
checkTarget html
cigarsToEvents html
comb_along html
cumsumw html
decode html
defGR html
experimentData-set html
experimentData html
extractEvents html
findEOP html
findLQR html
findPD html
flipRanges html
fwdReads-set html
fwdReads html
fwdReadsType-set html
fwdReadsType html
geom_bezier html
getEventInfo html
getEvents html
get_amplicon html
get_left_primer html
get_right_primer html
goodAvgQuality html
goodBaseQuality html
lookupAlignment html
makeAlignment html
metaplot_deletions html
metaplot_insertions html
metaplot_mismatches html
pairToEvents html
plot_amplicon html
plot_cuts html
plot_deletions html
plot_height html
plot_heterogeneity html
plot_insertions html
plot_mismatches html
plot_variants html
readCounts-set html
readCounts html
revComp html
rveReads-set html
rveReads html
rveReadsType-set html
rveReadsType html
unassignedCount html
unassignedData-set html
unassignedData html
upperGroups html
writeAlignments html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (amplican)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'MouseFM' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'SMAD' is missing or broken
done