| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:08:52 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the TimeSeriesExperiment package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TimeSeriesExperiment.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1965/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TimeSeriesExperiment 1.13.0 (landing page) Lan Huong Nguyen
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: TimeSeriesExperiment |
| Version: 1.13.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:TimeSeriesExperiment.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings TimeSeriesExperiment_1.13.0.tar.gz |
| StartedAt: 2022-03-17 20:28:52 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:32:29 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 217.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TimeSeriesExperiment.Rcheck |
| Warnings: 0 |
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:TimeSeriesExperiment.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings TimeSeriesExperiment_1.13.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/TimeSeriesExperiment.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'TimeSeriesExperiment/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'TimeSeriesExperiment' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'TimeSeriesExperiment' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: 'S4Vectors:::selectSome'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
clusterTimeSeries: no visible binding for global variable 'freq'
clusterTimeSeries: no visible binding for global variable '.'
Undefined global functions or variables:
. freq
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
differentialExpression 11.72 0.07 11.80
plotTimeSeriesPCA 6.96 0.99 7.93
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbuild/bbs-3.15-bioc/meat/TimeSeriesExperiment.Rcheck/00check.log'
for details.
TimeSeriesExperiment.Rcheck/00install.out
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL TimeSeriesExperiment
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'TimeSeriesExperiment' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TimeSeriesExperiment'
finding HTML links ... done
TimeSeriesExperiment html
finding level-2 HTML links ... done
addLags html
assignClusterDynamic html
assignClusterStatic html
clusterAssignment html
clusterData html
clusterTimeSeries html
colData html
collapseReplicates html
collapsed-data html
dataToTimeSeries html
differentialExpression html
dimensionReduction html
dot-addLagsToTimeSeries html
dot-imputeData html
endoderm_small html
filterFeatures html
groups html
makeTimeSeries html
makeTimeSeriesExperimentFromExpressionSet
html
makeTimeSeriesExperimentFromSummarizedExperiment
html
meltMatrix html
normalizeData html
pathwayEnrichment html
pipe html
plotEnrichment html
plotHeatmap html
plotSamplePCA html
plotTimeSeries html
plotTimeSeriesClusters html
plotTimeSeriesPCA html
replicates html
rowData html
row_and_colnames html
runPCA html
show-methods html
timeSeries html
timepointDE html
timepoints html
trajectoryDE html
varianceStabilization html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TimeSeriesExperiment)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
DESCRIPTION file of package 'TOAST' is missing or broken
done
TimeSeriesExperiment.Rcheck/TimeSeriesExperiment-Ex.timings
| name | user | system | elapsed | |
| TimeSeriesExperiment | 0.18 | 0.00 | 0.18 | |
| addLags | 0.41 | 0.06 | 0.47 | |
| clusterAssignment | 0.59 | 0.01 | 0.61 | |
| clusterData | 0.16 | 0.00 | 0.16 | |
| clusterTimeSeries | 0.54 | 0.07 | 0.61 | |
| colData | 0.06 | 0.00 | 0.06 | |
| collapseReplicates | 0.15 | 0.00 | 0.14 | |
| collapsed-data | 0.25 | 0.00 | 0.25 | |
| dataToTimeSeries | 0.06 | 0.00 | 0.06 | |
| differentialExpression | 11.72 | 0.07 | 11.80 | |
| dimensionReduction | 0.06 | 0.00 | 0.06 | |
| filterFeatures | 0.06 | 0.00 | 0.07 | |
| groups | 0.02 | 0.02 | 0.03 | |
| makeTimeSeries | 0.22 | 0.00 | 0.22 | |
| makeTimeSeriesExperimentFromExpressionSet | 0 | 0 | 0 | |
| makeTimeSeriesExperimentFromSummarizedExperiment | 0.25 | 0.02 | 0.26 | |
| meltMatrix | 0.01 | 0.01 | 0.03 | |
| normalizeData | 0.02 | 0.03 | 0.05 | |
| pathwayEnrichment | 0.79 | 0.05 | 0.84 | |
| pipe | 0 | 0 | 0 | |
| plotEnrichment | 0.66 | 0.03 | 0.69 | |
| plotHeatmap | 0.03 | 0.00 | 0.03 | |
| plotSamplePCA | 0.20 | 0.00 | 0.21 | |
| plotTimeSeries | 0.96 | 0.05 | 1.00 | |
| plotTimeSeriesClusters | 1.26 | 0.01 | 1.28 | |
| plotTimeSeriesPCA | 6.96 | 0.99 | 7.93 | |
| replicates | 0.03 | 0.00 | 0.04 | |
| rowData | 0.03 | 0.00 | 0.03 | |
| row_and_colnames | 0.01 | 0.00 | 0.01 | |
| runPCA | 0.07 | 0.00 | 0.06 | |
| timeSeries | 0.33 | 0.14 | 0.47 | |
| timepointDE | 0.10 | 0.00 | 0.11 | |
| timepoints | 0.02 | 0.00 | 0.02 | |
| trajectoryDE | 0.16 | 0.01 | 0.17 | |
| varianceStabilization | 0 | 0 | 0 | |