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This page was generated on 2022-03-18 11:08:49 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for Sushi on riesling1


To the developers/maintainers of the Sushi package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Sushi.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1914/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Sushi 1.33.1  (landing page)
Douglas H Phanstiel
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/Sushi
git_branch: master
git_last_commit: 04b874c
git_last_commit_date: 2021-11-15 13:39:09 -0400 (Mon, 15 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: Sushi
Version: 1.33.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Sushi
StartedAt: 2022-03-17 15:45:37 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:47:00 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 82.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Sushi
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'Sushi' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'Sushi'
    finding HTML links ... done
    SushiColors                             html  
    Sushi_5C.bedpe                          html  
    Sushi_ChIAPET_pol2.bedpe                html  
    Sushi_ChIPExo_CTCF.bedgraph             html  
    Sushi_ChIPSeq_CTCF.bedgraph             html  
    Sushi_ChIPSeq_pol2.bed                  html  
    Sushi_ChIPSeq_pol2.bedgraph             html  
    Sushi_ChIPSeq_severalfactors.bed        html  
    Sushi_DNaseI.bedgraph                   html  
    Sushi_GWAS.bed                          html  
    Sushi_HiC.matrix                        html  
    Sushi_RNASeq_K562.bedgraph              html  
    Sushi_genes.bed                         html  
    Sushi_hg18_genome                       html  
    Sushi_transcripts.bed                   html  
    addlegend                               html  
    chromOffsets                            html  
    convertstrandinfo                       html  
    labelgenome                             html  
    labelplot                               html  
    maptocolors                             html  
    maptolwd                                html  
    opaque                                  html  
    plotBed                                 html  
    plotBedgraph                            html  
    plotBedpe                               html  
    plotGenes                               html  
    finding level-2 HTML links ... done

    plotHic                                 html  
    plotManhattan                           html  
    sortChrom                               html  
    zoombox                                 html  
    zoomsregion                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: Package 'Sushi' is deprecated and will be removed from Bioconductor
  version 3.16
** testing if installed package can be loaded from final location
Warning: Package 'Sushi' is deprecated and will be removed from Bioconductor
  version 3.16
** testing if installed package keeps a record of temporary installation path
* DONE (Sushi)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'TDARACNE' is missing or broken
 done