This page was generated on 2022-10-19 13:22:15 -0400 (Wed, 19 Oct 2022).
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### Running command:
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### chmod a+r ScISI -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data ScISI
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* checking for file 'ScISI/DESCRIPTION' ... OK
* preparing 'ScISI':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'vignette.Rnw' using Sweave
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: RpsiXML
Loading required package: XML
Warning: Package 'RpsiXML' is deprecated and will be removed from Bioconductor
version 3.16
Attaching package: 'RpsiXML'
The following object is masked from 'package:IRanges':
members
Loading required package: annotate
Loading required package: apComplex
Loading required package: graph
Attaching package: 'graph'
The following object is masked from 'package:XML':
addNode
Loading required package: RBGL
Warning: Package 'ScISI' is deprecated and will be removed from Bioconductor
version 3.16
Warning in toGrep[[j]]$x <- gtcc : Coercing LHS to a list
Warning in toGrep[[j]]$x <- desc : Coercing LHS to a list
Warning: Package 'ppiData' is deprecated and will be removed from Bioconductor
version 3.16
Error: processing vignette 'vignette.Rnw' failed with diagnostics:
chunk 12 (label = ppiData)
Error in get("Gavin2006BPGraph") : object 'Gavin2006BPGraph' not found
--- failed re-building 'vignette.Rnw'
SUMMARY: processing the following file failed:
'vignette.Rnw'
Error: Vignette re-building failed.
Execution halted