Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:23:47 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SPLINTER package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SPLINTER.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1913/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SPLINTER 1.22.0 (landing page) Diana Low
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SPLINTER |
Version: 1.22.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.22.0.tar.gz |
StartedAt: 2022-10-19 08:27:43 -0400 (Wed, 19 Oct 2022) |
EndedAt: 2022-10-19 08:36:46 -0400 (Wed, 19 Oct 2022) |
EllapsedTime: 543.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SPLINTER.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SPLINTER.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SPLINTER_1.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/SPLINTER.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SPLINTER/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘SPLINTER’ version ‘1.22.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SPLINTER’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed eventPlot 17.486 0.422 17.928 getPCRsizes 4.864 0.207 5.077 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SPLINTER.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SPLINTER ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘SPLINTER’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package can be loaded from final location Creating a generic function for 'toJSON' from package 'jsonlite' in package 'googleVis' ** testing if installed package keeps a record of temporary installation path * DONE (SPLINTER)
SPLINTER.Rcheck/SPLINTER-Ex.timings
name | user | system | elapsed | |
acceptor.m | 0.004 | 0.002 | 0.005 | |
addEnsemblAnnotation | 0.011 | 0.002 | 0.011 | |
callPrimer3 | 0 | 0 | 0 | |
checkPrimer | 0.140 | 0.002 | 0.143 | |
compatible_cds | 0.002 | 0.001 | 0.003 | |
compatible_tx | 0.002 | 0.002 | 0.003 | |
donor.m | 0.001 | 0.001 | 0.002 | |
eventOutcomeCompare | 2.578 | 0.099 | 2.681 | |
eventOutcomeTranslate | 1.817 | 0.028 | 1.847 | |
eventPlot | 17.486 | 0.422 | 17.928 | |
extendROI | 1.243 | 0.032 | 1.276 | |
extractSpliceEvents | 0.007 | 0.001 | 0.007 | |
extractSpliceSites | 0.180 | 0.006 | 0.187 | |
findCompatibleEvents | 0.719 | 0.006 | 0.726 | |
findCompatibleExon | 0.387 | 0.001 | 0.389 | |
findTX | 0.025 | 0.001 | 0.025 | |
getPCRsizes | 4.864 | 0.207 | 5.077 | |
getRegionDNA | 0.504 | 0.015 | 0.520 | |
insertRegion | 0.303 | 0.001 | 0.304 | |
makeROI | 0.510 | 0.002 | 0.512 | |
makeUniqueIDs | 0.005 | 0.001 | 0.006 | |
pcr_result1 | 0.001 | 0.001 | 0.002 | |
plot_seqlogo | 0.072 | 0.003 | 0.075 | |
primers | 0.001 | 0.001 | 0.002 | |
psiPlot | 0.453 | 0.008 | 0.463 | |
region_minus_exon | 0.001 | 0.001 | 0.002 | |
roi | 0.001 | 0.002 | 0.002 | |
shapiroAcceptor | 0.781 | 0.024 | 0.828 | |
shapiroDonor | 0.761 | 0.022 | 0.784 | |
splice_data | 0.001 | 0.001 | 0.003 | |
splice_fasta | 0.002 | 0.001 | 0.003 | |
splitPCRhit | 0.002 | 0.001 | 0.003 | |
thecds | 0.001 | 0.001 | 0.003 | |
theexons | 0.002 | 0.001 | 0.003 | |
valid_cds | 0.001 | 0.002 | 0.003 | |
valid_tx | 0.001 | 0.002 | 0.003 | |