Renan Sauteraud
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/Pviz |
| git_branch: master |
| git_last_commit: f3f14af |
| git_last_commit_date: 2021-10-26 12:14:31 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:22 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Pviz package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Pviz.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1497/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Pviz 1.29.0 (landing page) Renan Sauteraud
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: Pviz |
| Version: 1.29.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Pviz.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings Pviz_1.29.0.tar.gz |
| StartedAt: 2022-03-17 19:57:22 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:01:29 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 247.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: Pviz.Rcheck |
| Warnings: 2 |
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:Pviz.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings Pviz_1.29.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/Pviz.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Pviz/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Pviz' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Pviz' can be installed ... WARNING
Found the following significant warnings:
Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/Pviz/man/ATrack.Rd:34: missing link 'GdObject'
Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/Pviz/man/DTrack.Rd:30: missing link 'GdObject'
Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/Pviz/man/ProbeTrack.Rd:68: missing link 'GdObject'
See 'D:/biocbuild/bbs-3.15-bioc/meat/Pviz.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.makeParMapping: no visible global function definition for
'assignInNamespace'
plot_clade: no visible global function definition for 'tail'
drawGD,ProbeTrack: no visible global function definition for
'pushViewport'
drawGD,ProbeTrack: no visible global function definition for 'viewport'
drawGD,ProbeTrack: no visible global function definition for
'popViewport'
drawGD,ProbeTrack: no visible global function definition for 'unit'
drawGD,ProbeTrack: no visible global function definition for 'gpar'
drawGD,ProbeTrack: no visible global function definition for
'convertWidth'
drawGD,ProbeTrack: no visible global function definition for
'stringWidth'
drawGD,ProbeTrack: no visible global function definition for
'stringHeight'
drawGD,ProbeTrack: no visible global function definition for
'grid.text'
drawGD,ProbeTrack: no visible global function definition for
'grid.rect'
drawGD,ProbeTrack: no visible global function definition for
'dataViewport'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'grid.rect'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'gpar'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
'pushViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'dataViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'convertHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
'stringHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
'popViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'.getGapPos'
drawGD,ProteinAxisTrack: no visible global function definition for
'gaps'
drawGD,ProteinAxisTrack: no visible global function definition for
'viewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'grid.segments'
drawGD,ProteinAxisTrack: no visible global function definition for
'gpar'
drawGD,ProteinAxisTrack: no visible global function definition for
'coord2ext'
drawGD,ProteinAxisTrack: no visible global function definition for
'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
'convertWidth'
drawGD,ProteinAxisTrack: no visible global function definition for
'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
'pushViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'dataViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'gpar'
drawGD,ProteinSequenceTrack: no visible global function definition for
'popViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'convertUnit'
drawGD,ProteinSequenceTrack: no visible global function definition for
'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.lines'
drawGD,ProteinSequenceTrack: no visible global function definition for
'unit'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.text'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.rect'
Undefined global functions or variables:
.getGapPos assignInNamespace convertHeight convertUnit convertWidth
coord2ext dataViewport gaps gpar grid.lines grid.rect grid.segments
grid.text popViewport pushViewport stringHeight stringWidth tail unit
viewport
Consider adding
importFrom("utils", "assignInNamespace", "tail")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'ATrack.Rd':
'GdObject'
Missing link or links in documentation object 'DTrack.Rd':
'GdObject'
Missing link or links in documentation object 'ProbeTrack.Rd':
'GdObject'
See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 1 NOTE
See
'D:/biocbuild/bbs-3.15-bioc/meat/Pviz.Rcheck/00check.log'
for details.
Pviz.Rcheck/00install.out
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###
### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL Pviz
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'Pviz' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Pviz'
finding HTML links ... done
ATrack html
finding level-2 HTML links ... done
Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/Pviz/man/ATrack.Rd:34: missing link 'GdObject'
CladeTrack html
DTrack html
Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/Pviz/man/DTrack.Rd:30: missing link 'GdObject'
ProbeTrack html
Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/Pviz/man/ProbeTrack.Rd:68: missing link 'GdObject'
ProteinAxisTrack html
ProteinSequenceTrack html
plot_clade html
plot_inter html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Pviz)
Making 'packages.html' ... done
Pviz.Rcheck/Pviz-Ex.timings
| name | user | system | elapsed | |
| ATrack | 2.39 | 0.08 | 2.47 | |
| CladeTrack | 1.08 | 0.11 | 1.19 | |
| DTrack | 0.1 | 0.0 | 0.1 | |
| ProbeTrack | 2.78 | 0.12 | 2.90 | |
| ProteinAxisTrack | 0.36 | 0.00 | 0.36 | |
| ProteinSequenceTrack | 0.17 | 0.00 | 0.18 | |
| plot_clade | 1.09 | 0.05 | 1.14 | |
| plot_inter | 0.49 | 0.01 | 0.50 | |