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This page was generated on 2022-10-19 13:20:40 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for PERFect on nebbiolo1


To the developers/maintainers of the PERFect package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PERFect.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1436/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PERFect 1.10.0  (landing page)
Quy Cao
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/PERFect
git_branch: RELEASE_3_15
git_last_commit: e0a5ccf
git_last_commit_date: 2022-04-26 12:00:05 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: PERFect
Version: 1.10.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PERFect
StartedAt: 2022-10-18 17:31:30 -0400 (Tue, 18 Oct 2022)
EndedAt: 2022-10-18 17:34:10 -0400 (Tue, 18 Oct 2022)
EllapsedTime: 160.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PERFect
###
##############################################################################
##############################################################################


* checking for file ‘PERFect/DESCRIPTION’ ... OK
* preparing ‘PERFect’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MethodIllustration.Rmd’ using rmarkdown
Loading required package: sn
Loading required package: stats4

Attaching package: 'sn'

The following object is masked from 'package:stats':

    sd

Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in checkparamlist(arg_startfix$start.arg, arg_startfix$fix.arg,  :
  Some parameter names have no starting/fixed value but have a default value: tau.
Warning in rbind(deparse.level, ...) :
  number of columns of result, 20, is not a multiple of vector length 21 of arg 1
Warning in rbind(deparse.level, ...) :
  number of columns of result, 20, is not a multiple of vector length 21 of arg 1
Quitting from lines 587-594 (MethodIllustration.Rmd) 
Error: processing vignette 'MethodIllustration.Rmd' failed with diagnostics:
missing value where TRUE/FALSE needed
--- failed re-building ‘MethodIllustration.Rmd’

SUMMARY: processing the following file failed:
  ‘MethodIllustration.Rmd’

Error: Vignette re-building failed.
Execution halted