Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:21:46 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the MatrixGenerics package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MatrixGenerics.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1084/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MatrixGenerics 1.8.1 (landing page) Peter Hickey
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: MatrixGenerics |
Version: 1.8.1 |
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MatrixGenerics.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MatrixGenerics_1.8.1.tar.gz |
StartedAt: 2022-10-19 01:33:35 -0400 (Wed, 19 Oct 2022) |
EndedAt: 2022-10-19 01:34:13 -0400 (Wed, 19 Oct 2022) |
EllapsedTime: 38.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MatrixGenerics.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MatrixGenerics.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MatrixGenerics_1.8.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/MatrixGenerics.Rcheck' * using R version 4.2.1 (2022-06-23 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'MatrixGenerics/DESCRIPTION' ... OK * this is package 'MatrixGenerics' version '1.8.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MatrixGenerics' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: 'methods:::fromNextMethod' 'methods:::getGenericFromCall' See the note in ?`:::` about the use of this operator. There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: '.load_next_suggested_package_to_search' * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'F:/biocbuild/bbs-3.15-bioc/meat/MatrixGenerics.Rcheck/00check.log' for details.
MatrixGenerics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MatrixGenerics ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'MatrixGenerics' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixGenerics)
MatrixGenerics.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(MatrixGenerics) Loading required package: matrixStats Attaching package: 'MatrixGenerics' The following objects are masked from 'package:matrixStats': colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, colCounts, colCummaxs, colCummins, colCumprods, colCumsums, colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, colWeightedMeans, colWeightedMedians, colWeightedSds, colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, rowWeightedMads, rowWeightedMeans, rowWeightedMedians, rowWeightedSds, rowWeightedVars > > test_check("MatrixGenerics") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 312 ] > > proc.time() user system elapsed 2.68 0.23 2.89
MatrixGenerics.Rcheck/MatrixGenerics-Ex.timings
name | user | system | elapsed | |
rowAlls | 0.02 | 0.00 | 0.02 | |
rowAnyNAs | 0 | 0 | 0 | |
rowAnys | 0 | 0 | 0 | |
rowAvgsPerColSet | 0.01 | 0.00 | 0.01 | |
rowCollapse | 0 | 0 | 0 | |
rowCounts | 0 | 0 | 0 | |
rowCummaxs | 0 | 0 | 0 | |
rowCummins | 0 | 0 | 0 | |
rowCumprods | 0 | 0 | 0 | |
rowCumsums | 0 | 0 | 0 | |
rowDiffs | 0 | 0 | 0 | |
rowIQRDiffs | 0 | 0 | 0 | |
rowIQRs | 0 | 0 | 0 | |
rowLogSumExps | 0 | 0 | 0 | |
rowMadDiffs | 0 | 0 | 0 | |
rowMads | 0.02 | 0.00 | 0.01 | |
rowMaxs | 0 | 0 | 0 | |
rowMeans2 | 0 | 0 | 0 | |
rowMedians | 0 | 0 | 0 | |
rowMins | 0 | 0 | 0 | |
rowOrderStats | 0 | 0 | 0 | |
rowProds | 0 | 0 | 0 | |
rowQuantiles | 0 | 0 | 0 | |
rowRanges | 0 | 0 | 0 | |
rowRanks | 0 | 0 | 0 | |
rowSdDiffs | 0 | 0 | 0 | |
rowSds | 0 | 0 | 0 | |
rowSums2 | 0 | 0 | 0 | |
rowTabulates | 0.02 | 0.00 | 0.01 | |
rowVarDiffs | 0 | 0 | 0 | |
rowVars | 0 | 0 | 0 | |
rowWeightedMads | 0 | 0 | 0 | |
rowWeightedMeans | 0 | 0 | 0 | |
rowWeightedMedians | 0 | 0 | 0 | |
rowWeightedSds | 0 | 0 | 0 | |
rowWeightedVars | 0 | 0 | 0 | |