Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:07:54 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the MAGeCKFlute package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MAGeCKFlute.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1040/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MAGeCKFlute 1.99.2 (landing page) Wubing Zhang
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: MAGeCKFlute |
Version: 1.99.2 |
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MAGeCKFlute.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MAGeCKFlute_1.99.2.tar.gz |
StartedAt: 2022-03-17 19:28:25 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 19:32:36 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 250.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MAGeCKFlute.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MAGeCKFlute.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MAGeCKFlute_1.99.2.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/MAGeCKFlute.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'MAGeCKFlute/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MAGeCKFlute' version '1.99.2' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MAGeCKFlute' can be installed ... OK * checking installed package size ... NOTE installed size is 21.0Mb sub-directories of 1Mb or more: extdata 20.3Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed MAView 7.75 0.17 7.92 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'D:/biocbuild/bbs-3.15-bioc/meat/MAGeCKFlute.Rcheck/00check.log' for details.
MAGeCKFlute.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MAGeCKFlute ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'MAGeCKFlute' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading snapshotDate(): 2022-03-16 ** help *** installing help indices converting help for package 'MAGeCKFlute' finding HTML links ... done BarView html BatchRemove html ConsistencyView html CutoffCalling html DensityDiffView html DensityView html EnrichAB html EnrichAnalyzer html EnrichSquare html EnrichedFilter html EnrichedGeneView html EnrichedView html FluteMLE html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/flutemle.html FluteRRA html HeatmapView html IdentBarView html IncorporateDepmap html MAView html MapRatesView html NormalizeBeta html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/normalizebeta.html OmitCommonEssential html RankView html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/rankview.html ReadBeta html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readbeta.html ReadGMT html ReadRRA html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/readrra.html ReadsgRRA html ResembleDepmap html ScatterView html Selector html SquareView html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/squareview.html TransGeneID html ViolinView html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/violinview.html VolcanoView html arrangePathview html enrich.GSE html enrich.HGT html enrich.ORT html getCols html getGeneAnn html getOrg html getOrtAnn html gsGetter html hclustView html loadDepmap html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-MAGeCKFlute/00new/MAGeCKFlute/help/LoadDepmap.html noEnrichPlot html normalize.loess html reexports html retrieve_gs html sgRankView html writeGMT html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2022-03-16 ** testing if installed package can be loaded from final location snapshotDate(): 2022-03-16 ** testing if installed package keeps a record of temporary installation path * DONE (MAGeCKFlute) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'PanomiR' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'recount3' is missing or broken done
MAGeCKFlute.Rcheck/MAGeCKFlute-Ex.timings
name | user | system | elapsed | |
BarView | 0.29 | 0.00 | 0.28 | |
BatchRemove | 1.56 | 0.03 | 1.59 | |
ConsistencyView | 0.72 | 0.13 | 0.84 | |
CutoffCalling | 0 | 0 | 0 | |
DensityDiffView | 0.89 | 0.01 | 0.91 | |
DensityView | 0.82 | 0.00 | 0.81 | |
EnrichAnalyzer | 0.01 | 0.00 | 0.00 | |
EnrichedFilter | 0.02 | 0.00 | 0.01 | |
EnrichedGeneView | 0 | 0 | 0 | |
EnrichedView | 0.01 | 0.00 | 0.02 | |
FluteMLE | 0 | 0 | 0 | |
FluteRRA | 0 | 0 | 0 | |
HeatmapView | 0.3 | 0.0 | 0.3 | |
IdentBarView | 0.14 | 0.00 | 0.14 | |
IncorporateDepmap | 0.16 | 0.00 | 0.15 | |
MAView | 7.75 | 0.17 | 7.92 | |
MapRatesView | 0.32 | 0.00 | 0.33 | |
NormalizeBeta | 0.66 | 0.02 | 0.67 | |
OmitCommonEssential | 0 | 0 | 0 | |
RankView | 0.56 | 0.00 | 0.57 | |
ReadBeta | 0.22 | 0.02 | 0.23 | |
ReadRRA | 0.19 | 0.00 | 0.19 | |
ReadsgRRA | 0 | 0 | 0 | |
ResembleDepmap | 0.14 | 0.00 | 0.14 | |
ScatterView | 2.64 | 0.07 | 2.72 | |
Selector | 0.48 | 0.00 | 0.48 | |
SquareView | 1.22 | 0.05 | 1.32 | |
TransGeneID | 1.21 | 0.08 | 1.28 | |
ViolinView | 0.86 | 0.08 | 0.93 | |
VolcanoView | 1.40 | 0.06 | 1.47 | |
arrangePathview | 0.24 | 0.00 | 0.24 | |
enrich.GSE | 0.01 | 0.00 | 0.01 | |
enrich.HGT | 1.53 | 0.11 | 1.64 | |
enrich.ORT | 3.39 | 0.08 | 3.47 | |
getCols | 0.02 | 0.00 | 0.01 | |
getGeneAnn | 0 | 0 | 0 | |
getOrg | 0 | 0 | 0 | |
getOrtAnn | 0 | 0 | 0 | |
gsGetter | 0.76 | 0.01 | 0.78 | |
hclustView | 0.39 | 0.03 | 0.43 | |
loadDepmap | 0 | 0 | 0 | |
normalize.loess | 0.85 | 0.02 | 0.86 | |
sgRankView | 0.10 | 0.00 | 0.11 | |
writeGMT | 0.04 | 0.00 | 0.03 | |