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This page was generated on 2022-03-17 11:08:02 -0400 (Thu, 17 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4060
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for InterMineR on riesling1


To the developers/maintainers of the InterMineR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InterMineR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 949/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
InterMineR 1.17.3  (landing page)
InterMine Team
Snapshot Date: 2022-03-16 13:55:23 -0400 (Wed, 16 Mar 2022)
git_url: https://git.bioconductor.org/packages/InterMineR
git_branch: master
git_last_commit: a4c7bce
git_last_commit_date: 2022-01-05 04:53:35 -0400 (Wed, 05 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: InterMineR
Version: 1.17.3
Command: rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=InterMineR.buildbin-libdir InterMineR_1.17.3.tar.gz
StartedAt: 2022-03-16 21:07:48 -0400 (Wed, 16 Mar 2022)
EndedAt: 2022-03-16 21:09:04 -0400 (Wed, 16 Mar 2022)
EllapsedTime: 75.5 seconds
RetCode: 0
Status:   OK  
PackageFile: InterMineR_1.17.3.zip
PackageFileSize: 799.4 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=InterMineR.buildbin-libdir InterMineR_1.17.3.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'InterMineR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'intersect' in package 'InterMineR'
Creating a new generic function for 'union' in package 'InterMineR'
Creating a new generic function for 'subtract' in package 'InterMineR'
** help
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:41: unexpected section header '\arguments'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:42: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:50: unexpected section header '\arguments'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:51: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:59: unexpected section header '\arguments'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:60: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:63: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:66: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:69: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:72: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:80: unexpected section header '\arguments'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:81: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:84: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:87: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:90: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:98: unexpected section header '\arguments'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:99: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:102: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:105: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:108: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:116: unexpected section header '\arguments'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:117: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:120: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:123: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:126: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:134: unexpected section header '\arguments'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:135: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:138: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:141: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:144: unknown macro '\item'
Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:147: unknown macro '\item'
*** installing help indices
  converting help for package 'InterMineR'
    finding HTML links ... done
    InterMineR-class                        html  
    InterMineR-methods                      html  
    InterMineR-package                      html  
    ListManager-class                       html  
    ListManager-methods                     html  
    PL_DiabetesGenes                        html  
    PL_FlyTF_site_specific_TFs              html  
    convertToGRanges                        html  
    convertToGeneAnswers                    html  
    convertToRangedSummarizedExperiment     html  
    doEnrichment                            html  
    getDatasets                             html  
    getGeneIds                              html  
    getModel                                html  
    getRelease                              html  
    getTemplateQuery                        html  
    getTemplates                            html  
    getVersion                              html  
    getWidgets                              html  
    initInterMine                           html  
    listDatasets                            html  
    listMines                               html  
    list_manager                            html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/InterMineR.buildbin-libdir/00LOCK-InterMineR/00new/InterMineR/help/webservice-methods.html
    newQuery                                html  
    runQuery                                html  
    setConstraints                          html  
    setQuery                                html  
    simplifyResult                          html  
    summary                                 html  
    webservice-class                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'subtract'
Warning: multiple methods tables found for 'intersect'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'union'
Warning: multiple methods tables found for 'subtract'
Warning: multiple methods tables found for 'intersect'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'InterMineR' as InterMineR_1.17.3.zip
* DONE (InterMineR)