Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-17 11:08:02 -0400 (Thu, 17 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4060 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the InterMineR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/InterMineR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 949/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
InterMineR 1.17.3 (landing page) InterMine Team
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: InterMineR |
Version: 1.17.3 |
Command: rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=InterMineR.buildbin-libdir InterMineR_1.17.3.tar.gz |
StartedAt: 2022-03-16 21:07:48 -0400 (Wed, 16 Mar 2022) |
EndedAt: 2022-03-16 21:09:04 -0400 (Wed, 16 Mar 2022) |
EllapsedTime: 75.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: InterMineR_1.17.3.zip |
PackageFileSize: 799.4 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf InterMineR.buildbin-libdir && mkdir InterMineR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=InterMineR.buildbin-libdir InterMineR_1.17.3.tar.gz ### ############################################################################## ############################################################################## * installing *source* package 'InterMineR' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'intersect' in package 'InterMineR' Creating a new generic function for 'union' in package 'InterMineR' Creating a new generic function for 'subtract' in package 'InterMineR' ** help Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:41: unexpected section header '\arguments' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:42: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:50: unexpected section header '\arguments' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:51: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:59: unexpected section header '\arguments' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:60: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:63: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:66: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:69: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:72: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:80: unexpected section header '\arguments' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:81: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:84: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:87: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:90: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:98: unexpected section header '\arguments' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:99: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:102: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:105: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:108: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:116: unexpected section header '\arguments' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:117: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:120: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:123: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:126: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:134: unexpected section header '\arguments' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:135: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:138: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:141: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:144: unknown macro '\item' Warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpMPvy8u/R.INSTALL9ae839f35fb6/InterMineR/man/ListManager-methods.Rd:147: unknown macro '\item' *** installing help indices converting help for package 'InterMineR' finding HTML links ... done InterMineR-class html InterMineR-methods html InterMineR-package html ListManager-class html ListManager-methods html PL_DiabetesGenes html PL_FlyTF_site_specific_TFs html convertToGRanges html convertToGeneAnswers html convertToRangedSummarizedExperiment html doEnrichment html getDatasets html getGeneIds html getModel html getRelease html getTemplateQuery html getTemplates html getVersion html getWidgets html initInterMine html listDatasets html listMines html list_manager html REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/InterMineR.buildbin-libdir/00LOCK-InterMineR/00new/InterMineR/help/webservice-methods.html newQuery html runQuery html setConstraints html setQuery html simplifyResult html summary html webservice-class html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: multiple methods tables found for 'union' Warning: multiple methods tables found for 'subtract' Warning: multiple methods tables found for 'intersect' ** testing if installed package can be loaded from final location Warning: multiple methods tables found for 'union' Warning: multiple methods tables found for 'subtract' Warning: multiple methods tables found for 'intersect' ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'InterMineR' as InterMineR_1.17.3.zip * DONE (InterMineR)