This page was generated on 2022-10-19 13:21:34 -0400 (Wed, 19 Oct 2022).
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### Running command:
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### chmod a+r GEOmetadb -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GEOmetadb
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* checking for file 'GEOmetadb/DESCRIPTION' ... OK
* preparing 'GEOmetadb':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'GEOmetadb.Rmd' using rmarkdown
Loading required package: GEOquery
Loading required package: Biobase
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce,
anyDuplicated, append, as.data.frame,
basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply,
match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rownames,
sapply, setdiff, sort, table, tapply, union,
unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material;
view with 'browseVignettes()'. To cite
Bioconductor, see 'citation("Biobase")', and
for packages 'citation("pkgname")'.
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: RSQLite
trying URL 'https://gbnci.cancer.gov/geo/GEOmetadb_demo.sqlite.gz'
Warning in download.file(url_geo, destfile = localfile, mode = "wb") :
URL 'https://gbnci.cancer.gov/geo/GEOmetadb_demo.sqlite.gz': Timeout of 300 seconds was reached
Quitting from lines 88-97 (GEOmetadb.Rmd)
Error: processing vignette 'GEOmetadb.Rmd' failed with diagnostics:
cannot open URL 'https://gbnci.cancer.gov/geo/GEOmetadb_demo.sqlite.gz'
--- failed re-building 'GEOmetadb.Rmd'
SUMMARY: processing the following file failed:
'GEOmetadb.Rmd'
Error: Vignette re-building failed.
Execution halted