Van Anh Huynh-Thu
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/GENIE3 |
| git_branch: master |
| git_last_commit: 608bcbc |
| git_last_commit_date: 2021-10-26 12:36:50 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:36 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the GENIE3 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GENIE3.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 743/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GENIE3 1.17.0 (landing page) Van Anh Huynh-Thu
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: GENIE3 |
| Version: 1.17.0 |
| Command: rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GENIE3.buildbin-libdir GENIE3_1.17.0.tar.gz |
| StartedAt: 2022-03-17 21:10:46 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:12:17 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 91.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: GENIE3_1.17.0.zip |
| PackageFileSize: 270.2 KiB |
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### Running command:
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### rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=GENIE3.buildbin-libdir GENIE3_1.17.0.tar.gz
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* installing *source* package 'GENIE3' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c GENIE3.c -o GENIE3.o
GENIE3.c: In function 'find_the_best_threshold_multiregr':
GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized]
current_threshold.f=best_threshold;
~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
current_threshold_info=best_info;
~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
GENIE3.c: In function 'build_one_tree_ensemble':
GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized]
write_one_tree(current_tree, fp);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
GENIE3.c: In function 'find_the_best_threshold_symb_multiregr':
GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized]
current_threshold_info=best_info;
~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate':
GENIE3.c:1762:10: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized]
return flag_continue;
^~~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/GENIE3.buildbin-libdir/00LOCK-GENIE3/00new/GENIE3/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'GENIE3' with signature '"SummarizedExperiment"': no definition for class "SummarizedExperiment"
in method for 'GENIE3' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
converting help for package 'GENIE3'
finding HTML links ... done
GENIE3 html
getLinkList html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GENIE3' as GENIE3_1.17.0.zip
* DONE (GENIE3)