| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:20:08 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the CountClust package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CountClust.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 422/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Kushal Dey
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: CountClust |
| Version: 1.24.0 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CountClust |
| StartedAt: 2022-10-18 16:21:32 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 16:22:03 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 30.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CountClust
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* checking for file ‘CountClust/DESCRIPTION’ ... OK
* preparing ‘CountClust’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘count-clust.Rmd’ using rmarkdown
Loading required package: usethis
Downloading GitHub repo TaddyLab/maptpx@HEAD
Installing package into '/tmp/RtmpEhdMGF/Rinst3f241437062a9a'
(as 'lib' is unspecified)
* installing *source* package ‘maptpx’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -c init.c -o init.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -c latools.c -o latools.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -c rhelp.c -o rhelp.o
gcc -I"/home/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I/usr/local/include -DRPRINT -fpic -g -O2 -Wall -c topics.c -o topics.o
gcc -shared -L/home/biocbuild/bbs-3.15-bioc/R/lib -L/usr/local/lib -o maptpx.so init.o latools.o rhelp.o topics.o -L/home/biocbuild/bbs-3.15-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.15-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.15-bioc/R/lib -lR
installing to /tmp/RtmpEhdMGF/Rinst3f241437062a9a/00LOCK-maptpx/00new/maptpx/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maptpx)
Loading required package: ggplot2
Warning: Package 'CountClust' is deprecated and will be removed from
Bioconductor version 3.16
Warning in download.file("https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda", :
cannot open URL 'https://cdn.jsdelivr.net/gh/kkdey/GTExV6Brain@master/data/GTExV6Brain.rda': HTTP status was '403 Forbidden'
Quitting from lines 118-130 (count-clust.Rmd)
Error: processing vignette 'count-clust.Rmd' failed with diagnostics:
cannot open URL 'https://cdn.rawgit.com/kkdey/GTExV6Brain/master/data/GTExV6Brain.rda'
--- failed re-building ‘count-clust.Rmd’
SUMMARY: processing the following file failed:
‘count-clust.Rmd’
Error: Vignette re-building failed.
Execution halted