Yuan Tian
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/ChAMP |
| git_branch: RELEASE_3_15 |
| git_last_commit: 1548910 |
| git_last_commit_date: 2022-04-26 11:16:54 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:22:42 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ChAMP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ChAMP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 299/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ChAMP 2.26.0 (landing page) Yuan Tian
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: ChAMP |
| Version: 2.26.0 |
| Command: rm -rf ChAMP.buildbin-libdir && mkdir ChAMP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChAMP_2.26.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R ChAMP.buildbin-libdir |
| StartedAt: 2022-10-19 10:04:26 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 10:06:43 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 137.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: ChAMP_2.26.0.tgz |
| PackageFileSize: 4.182 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf ChAMP.buildbin-libdir && mkdir ChAMP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ChAMP_2.26.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R ChAMP.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=ChAMP.buildbin-libdir ChAMP_2.26.0.tar.gz' >>>>>>> * installing *source* package ‘ChAMP’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning messages: 1: replacing previous import 'matrixStats::rowMedians' by 'Biobase::rowMedians' when loading 'DSS' 2: replacing previous import 'matrixStats::anyMissing' by 'Biobase::anyMissing' when loading 'DSS' No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' Warning: replacing previous import 'plyr::summarise' by 'plotly::summarise' when loading 'ChAMP' Warning: replacing previous import 'plyr::rename' by 'plotly::rename' when loading 'ChAMP' Warning: replacing previous import 'plyr::arrange' by 'plotly::arrange' when loading 'ChAMP' Warning: replacing previous import 'plyr::mutate' by 'plotly::mutate' when loading 'ChAMP' Warning: replacing previous import 'plyr::is.discrete' by 'Hmisc::is.discrete' when loading 'ChAMP' Warning: replacing previous import 'plyr::summarize' by 'Hmisc::summarize' when loading 'ChAMP' Warning: replacing previous import 'plotly::subplot' by 'Hmisc::subplot' when loading 'ChAMP' Warning: replacing previous import 'GenomicRanges::sort' by 'globaltest::sort' when loading 'ChAMP' Warning: replacing previous import 'plotly::last_plot' by 'ggplot2::last_plot' when loading 'ChAMP' Warning: replacing previous import 'globaltest::model.matrix' by 'stats::model.matrix' when loading 'ChAMP' Warning: replacing previous import 'globaltest::p.adjust' by 'stats::p.adjust' when loading 'ChAMP' Note: possible error in 'dmrcate(myannotation, ': unused argument (mc.cores = cores) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'matrixStats::rowMedians' by 'Biobase::rowMedians' when loading 'DSS' Warning: replacing previous import 'matrixStats::anyMissing' by 'Biobase::anyMissing' when loading 'DSS' No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' Warning: replacing previous import 'plyr::summarise' by 'plotly::summarise' when loading 'ChAMP' Warning: replacing previous import 'plyr::rename' by 'plotly::rename' when loading 'ChAMP' Warning: replacing previous import 'plyr::arrange' by 'plotly::arrange' when loading 'ChAMP' Warning: replacing previous import 'plyr::mutate' by 'plotly::mutate' when loading 'ChAMP' Warning: replacing previous import 'plyr::is.discrete' by 'Hmisc::is.discrete' when loading 'ChAMP' Warning: replacing previous import 'plyr::summarize' by 'Hmisc::summarize' when loading 'ChAMP' Warning: replacing previous import 'plotly::subplot' by 'Hmisc::subplot' when loading 'ChAMP' Warning: replacing previous import 'GenomicRanges::sort' by 'globaltest::sort' when loading 'ChAMP' Warning: replacing previous import 'plotly::last_plot' by 'ggplot2::last_plot' when loading 'ChAMP' Warning: replacing previous import 'globaltest::model.matrix' by 'stats::model.matrix' when loading 'ChAMP' Warning: replacing previous import 'globaltest::p.adjust' by 'stats::p.adjust' when loading 'ChAMP' ** testing if installed package can be loaded from final location Warning: replacing previous import 'matrixStats::rowMedians' by 'Biobase::rowMedians' when loading 'DSS' Warning: replacing previous import 'matrixStats::anyMissing' by 'Biobase::anyMissing' when loading 'DSS' No methods found in package 'RSQLite' for request: 'dbListFields' when loading 'lumi' Warning: replacing previous import 'plyr::summarise' by 'plotly::summarise' when loading 'ChAMP' Warning: replacing previous import 'plyr::rename' by 'plotly::rename' when loading 'ChAMP' Warning: replacing previous import 'plyr::arrange' by 'plotly::arrange' when loading 'ChAMP' Warning: replacing previous import 'plyr::mutate' by 'plotly::mutate' when loading 'ChAMP' Warning: replacing previous import 'plyr::is.discrete' by 'Hmisc::is.discrete' when loading 'ChAMP' Warning: replacing previous import 'plyr::summarize' by 'Hmisc::summarize' when loading 'ChAMP' Warning: replacing previous import 'plotly::subplot' by 'Hmisc::subplot' when loading 'ChAMP' Warning: replacing previous import 'GenomicRanges::sort' by 'globaltest::sort' when loading 'ChAMP' Warning: replacing previous import 'plotly::last_plot' by 'ggplot2::last_plot' when loading 'ChAMP' Warning: replacing previous import 'globaltest::model.matrix' by 'stats::model.matrix' when loading 'ChAMP' Warning: replacing previous import 'globaltest::p.adjust' by 'stats::p.adjust' when loading 'ChAMP' ** testing if installed package keeps a record of temporary installation path * DONE (ChAMP)