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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:CellScore.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings CellScore_1.15.0.tar.gz
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/CellScore.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CellScore/DESCRIPTION' ... OK
* this is package 'CellScore' version '1.15.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CellScore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                                user system elapsed
CellScoreReport                29.46   3.77   33.22
heatmapOnOffMarkers            17.87   1.36   19.28
extractTransitions             15.56   1.55   17.11
RugplotCellScore               14.91   0.97   15.88
ScatterplotCellScoreComponents 14.78   1.01   15.79
BoxplotCellScore               11.49   1.95   13.44
PlotCosineSimHeatmap           12.32   1.05   13.37
CellScore                      11.18   1.45   12.64
CosineSimScore                 10.21   1.01   11.24
PcaStandards                    8.53   0.89    9.42
BarplotOnOff                    5.61   2.05    7.66
OnOff                           4.63   0.60    5.22
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL CellScore
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'CellScore' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CellScore'
    finding HTML links ... done
    BarplotOnOff                            html  
    BoxplotCellScore                        html  
    CellScore                               html  
    CellScoreReport                         html  
    CosineSimScore                          html  
    OnOff                                   html  
    PcaStandards                            html  
    PlotCosineSimHeatmap                    html  
    RugplotCellScore                        html  
    ScatterplotCellScoreComponents          html  
    extractTransitions                      html  
    heatmapOnOffMarkers                     html  
    rugplotDonorTargetTest                  html  
    scatterplotDonorTargetTest              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CellScore)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'rsbml' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'TMixClust' is missing or broken
 done