Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:22:41 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the CellNOptR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CellNOptR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 279/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CellNOptR 1.42.1 (landing page) Attila Gabor
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: CellNOptR |
Version: 1.42.1 |
Command: rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellNOptR_1.42.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CellNOptR.buildbin-libdir |
StartedAt: 2022-10-19 10:03:42 -0400 (Wed, 19 Oct 2022) |
EndedAt: 2022-10-19 10:04:17 -0400 (Wed, 19 Oct 2022) |
EllapsedTime: 35.6 seconds |
RetCode: 0 |
Status: OK |
PackageFile: CellNOptR_1.42.1.tgz |
PackageFileSize: 2.755 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellNOptR_1.42.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R CellNOptR.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CellNOptR.buildbin-libdir CellNOptR_1.42.1.tar.gz' >>>>>>> * installing *source* package ‘CellNOptR’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c simulatorT1.c -o simulatorT1.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I./include -fPIC -Wall -g -O2 -c simulatorTN.c -o simulatorTN.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CellNOptR.so simulatorT1.o simulatorTN.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.15-bioc/meat/CellNOptR.buildbin-libdir/00LOCK-CellNOptR/00new/CellNOptR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CellNOptR) >>>>>>> >>>>>>> FIXING LINKS FOR CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs/CellNOptR.so"