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###
### Running command:
###
###   set _R_INSTALL_TIME_PATCHES_=no&& D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL BiocParallel
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'BiocParallel' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c ipcmutex.cpp -o ipcmutex.o
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/apply.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/aux_/fold_impl.hpp:19,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/fold.hpp:20,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/remove_if.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/remove.hpp:18,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function_types/components.hpp:44,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/function_types/is_member_function_pointer.hpp:14,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/tti/detail/dmem_fun.hpp:10,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/tti/has_member_function.hpp:15,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:20,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
                 from ipcmutex.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/interprocess/detail/windows_intermodule_singleton.hpp:24,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/interprocess/detail/shared_dir_helpers.hpp:30,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/interprocess/shared_memory_object.hpp:30,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/interprocess/managed_shared_memory.hpp:27,
                 from ipcmutex.cpp:13:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/string.hpp: In member function 'boost::interprocess::ipcdetail::ref_count_ptr* boost::interprocess::ipcdetail::intermodule_singleton_helpers::windows_semaphore_based_map::find(const char*)':
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/string.hpp:406:43: warning: '<anonymous>.boost::container::dtl::basic_string_base<boost::container::new_allocator<char> >::long_t::start' may be used uninitialized in this function [-Wmaybe-uninitialized]
    {  return this->members_.plong_repr()->start;  }
                                           ^~~~~
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/string.hpp: In member function 'bool boost::interprocess::ipcdetail::intermodule_singleton_helpers::windows_semaphore_based_map::erase(const char*)':
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/string.hpp:406:43: warning: '<anonymous>.boost::container::dtl::basic_string_base<boost::container::new_allocator<char> >::long_t::start' may be used uninitialized in this function [-Wmaybe-uninitialized]
    {  return this->members_.plong_repr()->start;  }
                                           ^~~~~
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def ipcmutex.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-BiocParallel/00new/BiocParallel/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BiocParallel'
    finding HTML links ... done
    BatchJobsParam-class                    html  
    BatchtoolsParam-class                   html  
    BiocParallel-package                    html  
    BiocParallelParam-class                 html  
    DeveloperInterface                      html  
    DoparParam-class                        html  
    MulticoreParam-class                    html  
    SerialParam-class                       html  
    SnowParam-class                         html  
    bpaggregate                             html  
    bpiterate                               html  
    bplapply                                html  
    bploop                                  html  
    bpmapply                                html  
    bpok                                    html  
    bpoptions                               html  
    bpschedule                              html  
    bptry                                   html  
    bpvalidate                              html  
    bpvec                                   html  
    bpvectorize                             html  
    ipcmutex                                html  
    register                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BiocParallel)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'parody' is missing or broken
 done