Back to Build/check report for BioC 3.14 experimental data |
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This page was generated on 2022-04-13 14:50:23 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the ITALICSData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 189/408 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
ITALICSData 2.32.0 (landing page) Guillem Rigaill
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: ITALICSData |
Version: 2.32.0 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ITALICSData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ITALICSData_2.32.0.tar.gz |
StartedAt: 2022-04-13 11:31:00 -0400 (Wed, 13 Apr 2022) |
EndedAt: 2022-04-13 11:31:16 -0400 (Wed, 13 Apr 2022) |
EllapsedTime: 16.0 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: ITALICSData.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:ITALICSData.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings ITALICSData_2.32.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-data-experiment/meat/ITALICSData.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ITALICSData/DESCRIPTION’ ... OK * this is package ‘ITALICSData’ version ‘2.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ITALICSData’ can be installed ... OK * checking installed package size ... NOTE installed size is 182.5Mb sub-directories of 1Mb or more: extdata 181.6Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... NOTE prepare_Rd: Hind.QuartetEffect.Rd:6-8: Dropping empty section \usage prepare_Rd: Hind.QuartetEffect.Rd:14-16: Dropping empty section \format prepare_Rd: Hind.QuartetEffect.Rd:17: Dropping empty section \source prepare_Rd: Hind.QuartetEffect.Rd:18-19: Dropping empty section \references prepare_Rd: Nsp.QuartetEffect.Rd:6-8: Dropping empty section \usage prepare_Rd: Nsp.QuartetEffect.Rd:14-16: Dropping empty section \format prepare_Rd: Nsp.QuartetEffect.Rd:17: Dropping empty section \source prepare_Rd: Nsp.QuartetEffect.Rd:18-19: Dropping empty section \references prepare_Rd: Sty.QuartetEffect.Rd:6-8: Dropping empty section \usage prepare_Rd: Sty.QuartetEffect.Rd:14-16: Dropping empty section \format prepare_Rd: Sty.QuartetEffect.Rd:17: Dropping empty section \source prepare_Rd: Sty.QuartetEffect.Rd:18-19: Dropping empty section \references prepare_Rd: Xba.QuartetEffect.Rd:6-8: Dropping empty section \usage prepare_Rd: Xba.QuartetEffect.Rd:14-16: Dropping empty section \format prepare_Rd: Xba.QuartetEffect.Rd:17: Dropping empty section \source prepare_Rd: Xba.QuartetEffect.Rd:18-19: Dropping empty section \references prepare_Rd: quartetInfo.Rd:12-14: Dropping empty section \format prepare_Rd: quartetInfo.Rd:15-17: Dropping empty section \source prepare_Rd: quartetInfo.Rd:18-19: Dropping empty section \references prepare_Rd: snpInfo.Rd:12-14: Dropping empty section \format prepare_Rd: snpInfo.Rd:16-18: Dropping empty section \source prepare_Rd: snpInfo.Rd:19-20: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress quartetInfo.RData 727Kb 517Kb xz snpInfo.RData 68Kb 56Kb xz * checking examples ... NONE * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See ‘/home/biocbuild/bbs-3.14-data-experiment/meat/ITALICSData.Rcheck/00check.log’ for details.
ITALICSData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL ITALICSData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘ITALICSData’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ITALICSData)