Juliane Siebourg
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/staRank |
| git_branch: RELEASE_3_14 |
| git_last_commit: 4f35afa |
| git_last_commit_date: 2021-10-26 12:03:13 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:25 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the staRank package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/staRank.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1885/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| staRank 1.36.0 (landing page) Juliane Siebourg
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: staRank |
| Version: 1.36.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:staRank.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings staRank_1.36.0.tar.gz |
| StartedAt: 2022-04-13 03:36:24 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 03:40:13 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 228.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: staRank.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:staRank.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings staRank_1.36.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/staRank.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'staRank/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'staRank' version '1.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'staRank' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
OPIScore : <anonymous>: no visible global function definition for
'phyper'
aggregRank : <anonymous>: no visible global function definition for
'median'
mwTest2samp: no visible global function definition for 'pwilcox'
mwTest2samp: no visible global function definition for 'pnorm'
show,RankSummary: no visible global function definition for 'head'
stabilityRanking,cellHTS: no visible global function definition for
'channelNames'
stabilityRanking,cellHTS: no visible global function definition for
'sampleNames'
stabilityRanking,cellHTS: no visible global function definition for
'featureNames'
stabilityRanking,numeric: no visible global function definition for
'avrgRank<-'
stabilityRanking,numeric: no visible global function definition for
'cor'
summaryStats,list : <anonymous>: no visible global function definition
for 'median'
summaryStats,list : <anonymous>: no visible global function definition
for 't.test'
summaryStats,matrix : <anonymous>: no visible global function
definition for 'median'
summaryStats,matrix : <anonymous>: no visible global function
definition for 't.test'
Undefined global functions or variables:
avrgRank<- channelNames cor featureNames head median phyper pnorm
pwilcox sampleNames t.test
Consider adding
importFrom("stats", "cor", "median", "phyper", "pnorm", "pwilcox",
"t.test")
importFrom("utils", "head")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/staRank.Rcheck/00check.log'
for details.
staRank.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/staRank_1.36.0.tar.gz && rm -rf staRank.buildbin-libdir && mkdir staRank.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=staRank.buildbin-libdir staRank_1.36.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL staRank_1.36.0.zip && rm staRank_1.36.0.tar.gz staRank_1.36.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 278k 100 278k 0 0 478k 0 --:--:-- --:--:-- --:--:-- 479k
install for i386
* installing *source* package 'staRank' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'staRank'
finding HTML links ... done
Pi-methods html
RankSummary-class html
aggregRank html
avrgRank-methods html
baseRank-methods html
dataFormatRSA html
getRankmatrix html
getSampleScores-methods html
getStability html
method-methods html
mwTest2samp html
rankCor-methods html
runRSA html
salmonellaInfection html
salmonellaStability html
show-methods html
staRank-package html
stabRank-methods html
stabilityRanking-methods html
stableSetSize-methods html
summary-methods html
summaryStats-methods html
uniqueRSARanking html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'staRank' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'staRank' as staRank_1.36.0.zip
* DONE (staRank)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'staRank' successfully unpacked and MD5 sums checked
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staRank.Rcheck/examples_i386/staRank-Ex.timings
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staRank.Rcheck/examples_x64/staRank-Ex.timings
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