Wanding Zhou
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/sesame |
| git_branch: RELEASE_3_14 |
| git_last_commit: 88cfdf2 |
| git_last_commit_date: 2022-02-06 16:30:52 -0400 (Sun, 06 Feb 2022) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:21 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the sesame package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/sesame.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1775/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| sesame 1.12.9 (landing page) Wanding Zhou
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: sesame |
| Version: 1.12.9 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sesame_1.12.9.tar.gz && rm -rf sesame.buildbin-libdir && mkdir sesame.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sesame.buildbin-libdir sesame_1.12.9.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sesame_1.12.9.zip && rm sesame_1.12.9.tar.gz sesame_1.12.9.zip |
| StartedAt: 2022-04-12 05:33:05 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:36:13 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 187.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/sesame_1.12.9.tar.gz && rm -rf sesame.buildbin-libdir && mkdir sesame.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=sesame.buildbin-libdir sesame_1.12.9.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL sesame_1.12.9.zip && rm sesame_1.12.9.tar.gz sesame_1.12.9.zip
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install for i386
* installing *source* package 'sesame' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'sesame'
finding HTML links ... done
BetaValueToMValue html
DML html
DMR html
MValueToBetaValue html
RGChannelSetToSigDFs html
SNPcheck html
SigDF html
SigDFToRatioSet html
SigDFsToRGChannelSet html
addMask html
as.data.frame.sesameQC html
attachManifest html
bSubComplete html
bSubMostVariable html
bSubProbes html
binSignals html
bisConversionControl html
calcDatabaseSetStatistics1 html
calcDatabaseSetStatisticsAll html
checkLevels html
chipAddressToSignal html
cnSegmentation html
compareDatbaseSetOverlap html
compareMouseStrainReference html
compareMouseTissueReference html
controls html
createDatabaseSetNetwork html
createUCSCtrack html
deidentify html
detectionPnegEcdf html
detectionPoobEcdf html
detectionPoobEcdf2 html
diffRefSet html
dmContrasts html
dyeBiasCorr html
dyeBiasCorrMostBalanced html
dyeBiasCorrTypeINorm html
dyeBiasDistortion html
estimateCellComposition html
estimateLeukocyte html
extractDesign html
formatVCF html
getAFTypeIbySumAlleles html
getAutosomeProbes html
getBetas html
getBinCoordinates html
getDatabaseSetOverlap html
getNormCtls html
getProbesByChromosome html
getProbesByGene html
getProbesByRegion html
getProbesByTSS html
getRefSet html
getSexInfo html
inferEthnicity html
inferInfiniumIChannel html
inferSex html
inferSexKaryotypes html
inferSpecies html
inferStrain html
inferTissue html
initFileSet html
isUniqProbeID html
mapFileSet html
meanIntensity html
medianTotalIntensity html
neob html
noMasked html
noob html
openSesame html
openSesameToFile html
plotLollipop html
plotVolcano html
predictAgeHorvath353 html
predictAgeSkinBlood html
predictMouseAgeInMonth html
print.DMLSummary html
print.SigDF html
print.fileSet html
print.sesameQC html
probeID_designType html
probeSuccessRate html
qualityMask html
qualityRank html
reIdentify html
readFileSet html
readIDATpair html
reopenSesame html
resetMask html
scrub html
scrubSoft html
sdfPlatform html
sdf_read_table html
sdf_write_table html
searchIDATprefixes html
segmentBins html
sesame-package html
sesamePlotIntensVsBetas html
sesamePlotRedGrnQQ html
sesameQC html
sesamize html
setMask html
setMaskBySpecies html
signalMU html
sliceFileSet html
summaryExtractTest html
testEnrichment html
testEnrichment1 html
testEnrichmentFGSEA html
testEnrichmentFisher html
testEnrichmentGene html
testEnrichmentSpearman html
totalIntensities html
twoCompsEst2 html
visualizeGene html
visualizeProbes html
visualizeRegion html
visualizeSegments html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'sesame' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sesame' as sesame_1.12.9.zip
* DONE (sesame)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'sesame' successfully unpacked and MD5 sums checked