Aaron Lun
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/rebook |
| git_branch: RELEASE_3_14 |
| git_last_commit: 8c4ac33 |
| git_last_commit_date: 2021-10-26 13:01:49 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:11 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the rebook package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rebook.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1562/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rebook 1.4.0 (landing page) Aaron Lun
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: rebook |
| Version: 1.4.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rebook.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings rebook_1.4.0.tar.gz |
| StartedAt: 2022-04-13 01:22:40 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 01:28:27 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 347.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: rebook.Rcheck |
| Warnings: 2 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rebook.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings rebook_1.4.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/rebook.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rebook/DESCRIPTION' ... OK
* this is package 'rebook' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rebook' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... WARNING
Found the following significant warnings:
Warning: 'createMakefile' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
extractCached 0.74 0.07 6.46
scrapeReferences 0.63 0.17 11.25
extractFromPackage 0.01 0.01 11.79
compileChapter 0.00 0.00 5.69
** running examples for arch 'x64' ... WARNING
Found the following significant warnings:
Warning: 'createMakefile' is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
scrapeReferences 0.61 0.11 10.97
extractCached 0.57 0.11 5.38
extractFromPackage 0.04 0.00 5.58
compileChapter 0.00 0.00 5.30
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/rebook.Rcheck/00check.log'
for details.
rebook.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rebook_1.4.0.tar.gz && rm -rf rebook.buildbin-libdir && mkdir rebook.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rebook.buildbin-libdir rebook_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rebook_1.4.0.zip && rm rebook_1.4.0.tar.gz rebook_1.4.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 42727 100 42727 0 0 177k 0 --:--:-- --:--:-- --:--:-- 176k
install for i386
* installing *source* package 'rebook' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rebook'
finding HTML links ... done
bioc-images html
bookCache html
buildChapterGraph html
chapterPreamble html
finding level-2 HTML links ... done
collapseStart html
compileBook html
compileChapter html
configureBook html
createMakefile html
createRedirects html
deployCustomCSS html
extractCached html
extractFromPackage html
link html
openingDetails html
prettySessionInfo html
rmd2id html
scrapeDependencies html
scrapeReferences html
setupHTML html
updateDependencies html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rebook' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rebook' as rebook_1.4.0.zip
* DONE (rebook)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'rebook' successfully unpacked and MD5 sums checked
|
rebook.Rcheck/tests_i386/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(rebook)
> test_check("rebook")
<button class="rebook-collapse">View set-up code (Chapter \@ref(test-chapter))</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
```
</div>
<button class="rebook-collapse">View set-up code (Chapter \@ref(test-chapter))</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
#--- godzilla-1978 ---#
godzilla <- "rawr rawr"
mechagodzilla <- "beep beep"
#--- godzilla-2014 ---#
godzilla <- "I'm back."
muto <- "Hi."
```
</div>
processing file: test.Rmd
ordinary text without R code
label: unnamed-chunk-1 (with options)
List of 2
$ echo : logi FALSE
$ results: chr "asis"
ordinary text without R code
label: godzilla-1954
ordinary text without R code
label: unnamed-chunk-2
ordinary text without R code
label: unref-figure (with options)
List of 1
$ fig.cap: chr "BLAH BLAH BLAH"
ordinary text without R code
label: ghidorah-1964
ordinary text without R code
label: godzilla-1978
ordinary text without R code
label: godzilla-2014
output file: test.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS Test-book.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output Test-book.html --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\rmarkdown\lua\custom-environment.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\anchor-sections.lua" --metadata-file "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\Rtmp0a661P\file10ebc25f26b8c" --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\templates\gitbook.html" --highlight-style pygments --number-sections --mathjax --include-in-header "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\Rtmp0a661P\rmarkdown-str10ebc7bc25041.html"
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'Test-book'
processing file: test.Rmd
ordinary text without R code
label: unnamed-chunk-1 (with options)
List of 2
$ echo : logi FALSE
$ results: chr "asis"
ordinary text without R code
label: godzilla-1954
ordinary text without R code
label: unnamed-chunk-2
ordinary text without R code
label: unref-figure (with options)
List of 1
$ fig.cap: chr "BLAH BLAH BLAH"
ordinary text without R code
label: ghidorah-1964
ordinary text without R code
label: godzilla-1978
ordinary text without R code
label: godzilla-2014
output file: test.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS Test-book.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output Test-book.html --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\rmarkdown\lua\custom-environment.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\anchor-sections.lua" --metadata-file "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\Rtmp0a661P\file10ebc73be7420" --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\templates\gitbook.html" --highlight-style pygments --number-sections --mathjax --include-in-header "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\Rtmp0a661P\rmarkdown-str10ebc6a715d47.html"
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'Test-book'
ordinary text without R code
label: unnamed-chunk-1 (with options)
List of 1
$ echo: logi FALSE
inline R code fragments
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS stub.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output stub.html --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --template "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\Rtmp0a661P\rmarkdown-str10ebc639a5931.html"
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'stub.knit'
processing file: test.Rmd
ordinary text without R code
label: unnamed-chunk-1 (with options)
List of 2
$ echo : logi FALSE
$ results: chr "asis"
ordinary text without R code
label: godzilla-1954
ordinary text without R code
label: unnamed-chunk-2
ordinary text without R code
label: unref-figure (with options)
List of 1
$ fig.cap: chr "BLAH BLAH BLAH"
ordinary text without R code
label: ghidorah-1964
ordinary text without R code
label: godzilla-1978
ordinary text without R code
label: godzilla-2014
output file: test.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS Test-book.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output Test-book.html --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\rmarkdown\lua\custom-environment.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\anchor-sections.lua" --metadata-file "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\Rtmp0a661P\file10ebc5a8511f2" --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\templates\gitbook.html" --highlight-style pygments --number-sections --mathjax --include-in-header "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\Rtmp0a661P\rmarkdown-str10ebc66cd48c5.html"
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'Test-book'
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
[ FAIL 0 | WARN 6 | SKIP 3 | PASS 108 ]
== Skipped tests ===============================================================
* On Windows (3)
[ FAIL 0 | WARN 6 | SKIP 3 | PASS 108 ]
>
> proc.time()
user system elapsed
6.71 1.06 105.34
|
rebook.Rcheck/tests_x64/testthat.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(rebook)
> test_check("rebook")
<button class="rebook-collapse">View set-up code (Chapter \@ref(test-chapter))</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
```
</div>
<button class="rebook-collapse">View set-up code (Chapter \@ref(test-chapter))</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
#--- godzilla-1978 ---#
godzilla <- "rawr rawr"
mechagodzilla <- "beep beep"
#--- godzilla-2014 ---#
godzilla <- "I'm back."
muto <- "Hi."
```
</div>
processing file: test.Rmd
ordinary text without R code
label: unnamed-chunk-1 (with options)
List of 2
$ echo : logi FALSE
$ results: chr "asis"
ordinary text without R code
label: godzilla-1954
ordinary text without R code
label: unnamed-chunk-2
ordinary text without R code
label: unref-figure (with options)
List of 1
$ fig.cap: chr "BLAH BLAH BLAH"
ordinary text without R code
label: ghidorah-1964
ordinary text without R code
label: godzilla-1978
ordinary text without R code
label: godzilla-2014
output file: test.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS Test-book.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output Test-book.html --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\rmarkdown\lua\custom-environment.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\anchor-sections.lua" --metadata-file "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpuidvUA\file838873244bdf" --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\templates\gitbook.html" --highlight-style pygments --number-sections --mathjax --include-in-header "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpuidvUA\rmarkdown-str83888714649.html"
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'Test-book'
processing file: test.Rmd
ordinary text without R code
label: unnamed-chunk-1 (with options)
List of 2
$ echo : logi FALSE
$ results: chr "asis"
ordinary text without R code
label: godzilla-1954
ordinary text without R code
label: unnamed-chunk-2
ordinary text without R code
label: unref-figure (with options)
List of 1
$ fig.cap: chr "BLAH BLAH BLAH"
ordinary text without R code
label: ghidorah-1964
ordinary text without R code
label: godzilla-1978
ordinary text without R code
label: godzilla-2014
output file: test.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS Test-book.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output Test-book.html --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\rmarkdown\lua\custom-environment.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\anchor-sections.lua" --metadata-file "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpuidvUA\file8388d0f7c71" --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\templates\gitbook.html" --highlight-style pygments --number-sections --mathjax --include-in-header "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpuidvUA\rmarkdown-str8388460daa3.html"
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'Test-book'
ordinary text without R code
label: unnamed-chunk-1 (with options)
List of 1
$ echo: logi FALSE
inline R code fragments
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS stub.knit.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output stub.html --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --self-contained --variable bs3=TRUE --standalone --section-divs --template "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmd\h\default.html" --no-highlight --variable highlightjs=1 --variable theme=bootstrap --mathjax --variable "mathjax-url=https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML" --include-in-header "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpuidvUA\rmarkdown-str8388721649b1.html"
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'stub.knit'
processing file: test.Rmd
ordinary text without R code
label: unnamed-chunk-1 (with options)
List of 2
$ echo : logi FALSE
$ results: chr "asis"
ordinary text without R code
label: godzilla-1954
ordinary text without R code
label: unnamed-chunk-2
ordinary text without R code
label: unref-figure (with options)
List of 1
$ fig.cap: chr "BLAH BLAH BLAH"
ordinary text without R code
label: ghidorah-1964
ordinary text without R code
label: godzilla-1978
ordinary text without R code
label: godzilla-2014
output file: test.knit.md
"C:/PROGRA~1/Pandoc/pandoc" +RTS -K512m -RTS Test-book.md --to html4 --from markdown+autolink_bare_uris+tex_math_single_backslash --output Test-book.html --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\rmarkdown\lua\custom-environment.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\pagebreak.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\latex-div.lua" --lua-filter "C:\Users\biocbuild\bbs-3.14-bioc\R\library\rmarkdown\rmarkdown\lua\anchor-sections.lua" --metadata-file "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpuidvUA\file838810cb5fe6" --wrap preserve --standalone --section-divs --table-of-contents --toc-depth 3 --template "C:\Users\biocbuild\bbs-3.14-bioc\R\library\bookdown\templates\gitbook.html" --highlight-style pygments --number-sections --mathjax --include-in-header "C:\Users\biocbuild\bbs-3.14-bioc\tmpdir\RtmpuidvUA\rmarkdown-str838816722a.html"
[WARNING] This document format requires a nonempty <title> element.
Please specify either 'title' or 'pagetitle' in the metadata,
e.g. by using --metadata pagetitle="..." on the command line.
Falling back to 'Test-book'
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
<button class="rebook-collapse">View set-up code</button>
<div class="rebook-content">
```r
#--- godzilla-1954 ---#
godzilla <- "RAWR!"
#--- ghidorah-1964 ---#
godzilla <- "GAO GAO"
ghidorah <- "pew pew"
mothra = "Oh, I'm not in this one." # WRONG!
```
</div>
[ FAIL 0 | WARN 6 | SKIP 3 | PASS 108 ]
== Skipped tests ===============================================================
* On Windows (3)
[ FAIL 0 | WARN 6 | SKIP 3 | PASS 108 ]
>
> proc.time()
user system elapsed
6.95 1.00 101.61
|
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rebook.Rcheck/examples_i386/rebook-Ex.timings
|
rebook.Rcheck/examples_x64/rebook-Ex.timings
|