| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:10 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the rBiopaxParser package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rBiopaxParser.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1535/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rBiopaxParser 2.34.0 (landing page) Frank Kramer
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: rBiopaxParser |
| Version: 2.34.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rBiopaxParser_2.34.0.tar.gz && rm -rf rBiopaxParser.buildbin-libdir && mkdir rBiopaxParser.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rBiopaxParser.buildbin-libdir rBiopaxParser_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rBiopaxParser_2.34.0.zip && rm rBiopaxParser_2.34.0.tar.gz rBiopaxParser_2.34.0.zip |
| StartedAt: 2022-04-12 05:20:58 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:23:01 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 123.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/rBiopaxParser_2.34.0.tar.gz && rm -rf rBiopaxParser.buildbin-libdir && mkdir rBiopaxParser.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rBiopaxParser.buildbin-libdir rBiopaxParser_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL rBiopaxParser_2.34.0.zip && rm rBiopaxParser_2.34.0.tar.gz rBiopaxParser_2.34.0.zip
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install for i386
* installing *source* package 'rBiopaxParser' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rBiopaxParser'
finding HTML links ... done
CLASS_INHERITANCE_BP2 html
CLASS_INHERITANCE_BP3 html
CLASS_PROPERTIES_BP2 html
CLASS_PROPERTIES_BP3 html
DATABASE_BIOPAX html
addBiochemicalReaction html
addBiopaxInstance html
addBiopaxInstances html
addControl html
addPathway html
addPathwayComponents html
addPhysicalEntity html
addPhysicalEntityParticipant html
addPropertiesToBiopaxInstance html
addhash html
addns html
biopax html
calcGraphOverlap html
checkValidity html
colorGraphNodes html
combineNodes html
createBiopax html
diffGraphs html
downloadBiopaxData html
generateNewUniqueID html
getClassProperties html
getInstanceClass html
getInstanceProperty html
getNeighborhood html
getParticipants html
getReferencedIDs html
getReferencingIDs html
getSubClasses html
getSuperClasses html
getXrefAnnotations html
hasProperty html
internal_NrOfXMLNodes html
internal_XMLInstance2DF html
internal_checkArguments html
internal_generateXMLfromBiopax html
internal_getBiopaxModelAsDataFrame html
internal_propertyListToDF html
internal_resolvePhysicalEntityParticipant
html
intersectGraphs html
isOfClass html
isOfNamespace html
isURL html
layoutRegulatoryGraph html
listComplexComponents html
listInstances html
listInteractionComponents html
listPathwayComponents html
listPathways html
mergePathways html
pathway2AdjacancyMatrix html
pathway2Geneset html
pathway2Graph html
pathway2RegulatoryGraph html
plotRegulatoryGraph html
print.biopax html
rBiopaxParser-package html
readBiopax html
removeDisconnectedParts html
removeInstance html
removeNodes html
removeProperties html
selectInstances html
splitComplex html
striphash html
stripns html
transitiveClosure html
transitiveReduction html
unfactorize html
uniteGraphs html
writeBiopax html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rBiopaxParser' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'rBiopaxParser' as rBiopaxParser_2.34.0.zip
* DONE (rBiopaxParser)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'rBiopaxParser' successfully unpacked and MD5 sums checked