| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:08 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the ptairMS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ptairMS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1483/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ptairMS 1.2.0 (landing page) camille Roquencourt
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: ptairMS |
| Version: 1.2.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ptairMS_1.2.0.tar.gz && rm -rf ptairMS.buildbin-libdir && mkdir ptairMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ptairMS.buildbin-libdir ptairMS_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ptairMS_1.2.0.zip && rm ptairMS_1.2.0.tar.gz ptairMS_1.2.0.zip |
| StartedAt: 2022-04-12 07:22:41 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:24:10 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 89.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/ptairMS_1.2.0.tar.gz && rm -rf ptairMS.buildbin-libdir && mkdir ptairMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ptairMS.buildbin-libdir ptairMS_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL ptairMS_1.2.0.zip && rm ptairMS_1.2.0.tar.gz ptairMS_1.2.0.zip
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install for i386
* installing *source* package 'ptairMS' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c align.cpp -o align.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findEqualGreaterM.cpp -o findEqualGreaterM.o
C:/rtools40/mingw32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ptairMS.dll tmp.def RcppExports.o align.o findEqualGreaterM.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ptairMS.buildbin-libdir/00LOCK-ptairMS/00new/ptairMS/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
in method for 'annotateVOC' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
in method for 'writeEset' with signature '"ExpressionSet"': no definition for class "ExpressionSet"
** help
*** installing help indices
converting help for package 'ptairMS'
finding HTML links ... done
LocalMaximaSG html
OptimalWindowsSG html
PeakList html
TransmissionCurve html
aggregate html
align html
alignSamples html
annotation html
calibration html
calibrationFun html
changeTimeLimits html
convert_to_mzML html
createPtrSet html
cumulative_fit_function html
deadTimeCorr html
defineKnots html
detectPeak html
determinePeakShape html
exportSampleMetada html
extractEIC html
fit_averagePeak html
fit_averagePeak_function html
formula2mass html
getDirectory html
getFileNames html
getPeakList html
getSampleMetadata html
importSampleMetadata html
impute html
imputeMat html
initializeFit html
makeSubGroup html
plot html
plotCalib html
plotFeatures html
plotPeakShape html
plotRaw html
plotTIC html
ptairMS-package html
ptrRaw html
ptrSet html
readRaw html
resetSampleMetadata html
rmPeakList html
setSampleMetadata html
show-ptrRaw-method html
show-ptrSet-method html
snipBase html
timeLimits html
updatePtrSet html
width html
writeEset html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'ptairMS' ...
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c align.cpp -o align.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c findEqualGreaterM.cpp -o findEqualGreaterM.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o ptairMS.dll tmp.def RcppExports.o align.o findEqualGreaterM.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/ptairMS.buildbin-libdir/ptairMS/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ptairMS' as ptairMS_1.2.0.zip
* DONE (ptairMS)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'ptairMS' successfully unpacked and MD5 sums checked