Alexis Delabriere
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/proFIA |
| git_branch: RELEASE_3_14 |
| git_last_commit: b9efdcd |
| git_last_commit_date: 2021-10-26 12:31:18 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:07 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the proFIA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/proFIA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1463/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| proFIA 1.20.0 (landing page) Alexis Delabriere
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: proFIA |
| Version: 1.20.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/proFIA_1.20.0.tar.gz && rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proFIA.buildbin-libdir proFIA_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL proFIA_1.20.0.zip && rm proFIA_1.20.0.tar.gz proFIA_1.20.0.zip |
| StartedAt: 2022-04-12 05:53:24 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 05:55:21 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 117.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/proFIA_1.20.0.tar.gz && rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proFIA.buildbin-libdir proFIA_1.20.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL proFIA_1.20.0.zip && rm proFIA_1.20.0.tar.gz proFIA_1.20.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
36 744k 36 270k 0 0 515k 0 0:00:01 --:--:-- 0:00:01 515k
100 744k 100 744k 0 0 741k 0 0:00:01 0:00:01 --:--:-- 742k
install for i386
* installing *source* package 'proFIA' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c UtilFunc.c -o UtilFunc.o
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fastMatchPpm.c -o fastMatchPpm.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/proFIA.buildbin-libdir/00LOCK-proFIA/00new/proFIA/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'proFIA'
finding HTML links ... done
acquisitionDirectory html
analyzeAcquisitionFIA html
determiningInjectionZone html
determiningSizePeak.Geom html
estimateNoiseMS html
exportDataMatrix-proFIAset-method html
exportExpressionSet-proFIAset-method html
exportPeakTable-proFIAset-method html
exportSampleMetadata-proFIAset-method html
exportVariableMetadata-proFIAset-method
html
findBandsFIA html
findFIASignal html
findMzGroup-proFIAset-method html
getInjectionPeak html
group.FIA-proFIAset-method html
impute.FIA-proFIAset-method html
impute.KNN_TN-proFIAset-method html
impute.randomForest-proFIAset-method html
makeDataMatrix-proFIAset-method html
noiseEstimation-class html
peaksGroup-proFIAset-method html
plot html
plotFlowgrams-proFIAset-method html
plotNoise html
plotRaw-proFIAset-method html
plotSamplePeaks-proFIAset-method html
proFIA-package html
proFIAset-class html
proFIAset html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'proFIA' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c UtilFunc.c -o UtilFunc.o
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c fastMatchPpm.c -o fastMatchPpm.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/proFIA.buildbin-libdir/proFIA/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'proFIA' as proFIA_1.20.0.zip
* DONE (proFIA)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'proFIA' successfully unpacked and MD5 sums checked