Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:05:44 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the peco package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/peco.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1393/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
peco 1.6.0 (landing page) Chiaowen Joyce Hsiao
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: peco |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:peco.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings peco_1.6.0.tar.gz |
StartedAt: 2022-04-12 08:40:54 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 08:50:26 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 571.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: peco.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD check --install=check:peco.install-out.txt --library=/home/biocbuild/bbs-3.14-bioc/R/library --no-vignettes --timings peco_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.14-bioc/meat/peco.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘peco/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘peco’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘peco’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed fit_trendfilter 32.432 1.548 41.926 cycle_npreg_outsample 1.790 0.402 160.805 fit_loess 0.993 0.048 8.842 data_transform_quantile 0.854 0.115 9.974 fit_bspline 0.843 0.048 9.355 fit_cyclical_many 0.808 0.033 173.063 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
peco.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL peco ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’ * installing *source* package ‘peco’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (peco)
peco.Rcheck/peco-Ex.timings
name | user | system | elapsed | |
circ_dist | 0.010 | 0.001 | 0.010 | |
cycle_npreg_insample | 0 | 0 | 0 | |
cycle_npreg_outsample | 1.790 | 0.402 | 160.805 | |
data_transform_quantile | 0.854 | 0.115 | 9.974 | |
fit_bspline | 0.843 | 0.048 | 9.355 | |
fit_cyclical_many | 0.808 | 0.033 | 173.063 | |
fit_loess | 0.993 | 0.048 | 8.842 | |
fit_trendfilter | 32.432 | 1.548 | 41.926 | |
intensity2circle | 0.238 | 0.004 | 0.242 | |
rotation | 0.046 | 0.000 | 0.046 | |
shift_origin | 0.003 | 0.000 | 0.003 | |