##############################################################################
##############################################################################
###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:mosbi.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings mosbi_1.0.3.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/mosbi.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'mosbi/DESCRIPTION' ... OK
* this is package 'mosbi' version '1.0.3'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'mosbi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
  almost never needs to use ::: for its own objects:
  'get_communities'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... NOTE
GNU make is a SystemRequirements.
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/mosbi/libs/i386/mosbi.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.14-bioc/R/library/mosbi/libs/x64/mosbi.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
  Found 'printf', possibly from 'printf' (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  'C:/Users/biocbuild/bbs-3.14-bioc/meat/mosbi.Rcheck/00check.log'
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/mosbi_1.0.3.tar.gz && rm -rf mosbi.buildbin-libdir && mkdir mosbi.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mosbi.buildbin-libdir mosbi_1.0.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL mosbi_1.0.3.zip && rm mosbi_1.0.3.tar.gz mosbi_1.0.3.zip
###
##############################################################################
##############################################################################


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 99 76804   99 76740    0     0   345k      0 --:--:-- --:--:-- --:--:--  345k
100 76804  100 76804    0     0   148k      0 --:--:-- --:--:-- --:--:--  148k

install for i386

* installing *source* package 'mosbi' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c attr_graph.cpp -o attr_graph.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c attributeConnector.cpp -o attributeConnector.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c attribute_overlap.cpp -o attribute_overlap.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bicluster_methods.cpp -o bicluster_methods.o
bicluster_methods.cpp: In function 'bool validate_bicluster(Rcpp::S4, unsigned int, unsigned int)':
bicluster_methods.cpp:40:16: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
   if(r.length()<minRow){
      ~~~~~~~~~~^~~~~~~
bicluster_methods.cpp:44:16: warning: comparison of integer expressions of different signedness: 'R_xlen_t' {aka 'int'} and 'unsigned int' [-Wsign-compare]
   if(c.length()<minCol){
      ~~~~~~~~~~^~~~~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c boost_graph.cpp -o boost_graph.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                               ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graph_traits.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:24,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
                                 ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
                                                                 ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
                               ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
                      ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> & r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> && r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
                                      ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function_template.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/maybe_include.hpp:36,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function3.hpp:11,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphviz.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphml.hpp:20,
                 from boost_graph.cpp:3:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp: At global scope:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c boost_write.cpp -o boost_write.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                               ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graph_traits.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:24,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
                                 ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
                                                                 ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
                               ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
                      ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> & r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> && r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
                                      ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function_template.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/maybe_include.hpp:36,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function3.hpp:11,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphviz.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphml.hpp:20,
                 from boost_write.cpp:3:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp: At global scope:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c distance_matrix.cpp -o distance_matrix.o
distance_matrix.cpp: In member function 'virtual void SimWorker::operator()(std::size_t, std::size_t)':
distance_matrix.cpp:244:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'unsigned int'} [-Wsign-compare]
   for(int i=begin;i<end;i++){
                   ~^~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel/TinyThread.h:7,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel.h:6,
                 from distance_matrix.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel/Common.h: In instantiation of 'int RcppParallel::resolveValue(const char*, T, U) [with T = unsigned int; U = int]':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel.h:57:28:   required from 'void RcppParallel::parallelReduce(std::size_t, std::size_t, Reducer&, std::size_t, int) [with Reducer = SimWorker; std::size_t = unsigned int]'
distance_matrix.cpp:278:43:   required from here
C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel/Common.h:16:23: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
    if (requestedValue != defaultValue && requestedValue > 0)
        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractBF.cpp -o extractBF.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from extractBF.cpp:3:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function.hpp:30,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/split.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:23,
                 from extractBF.cpp:3:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/bits/locale_conv.h:41,
                 from C:/rtools40/mingw32/include/c++/8.3.0/locale:43,
                 from C:/rtools40/mingw32/include/c++/8.3.0/iomanip:43,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from extractBF.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
extractBF.cpp: In function 'Rcpp::S4 getBFCluster(Rcpp::String, int)':
extractBF.cpp:92:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'unsigned int'} [-Wsign-compare]
     for(int i=0; i<results.size();i++){
                  ~^~~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractQUBIC2.cpp -o extractQUBIC2.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from extractQUBIC2.cpp:7:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function.hpp:30,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/split.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:23,
                 from extractQUBIC2.cpp:7:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw32/include/c++/8.3.0/bits/locale_conv.h:41,
                 from C:/rtools40/mingw32/include/c++/8.3.0/locale:43,
                 from C:/rtools40/mingw32/include/c++/8.3.0/iomanip:43,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from extractQUBIC2.cpp:2:
C:/rtools40/mingw32/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c full_graph.cpp -o full_graph.o
full_graph.cpp: In function 'Rcpp::NumericMatrix full_graph(Rcpp::List, Rcpp::NumericMatrix, double, double, double, int)':
full_graph.cpp:50:25: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'R_xlen_t' {aka 'int'} [-Wsign-compare]
   for(unsigned int i=0;i<bics.length();++i){ // Loop over biclusters
                        ~^~~~~~~~~~~~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c misc.cpp -o misc.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c network_edge_strength.cpp -o network_edge_strength.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sample_biclusters.cpp -o sample_biclusters.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c write_matrix.cpp -o write_matrix.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o mosbi.dll tmp.def RcppExports.o attr_graph.o attributeConnector.o attribute_overlap.o bicluster_methods.o boost_graph.o boost_write.o distance_matrix.o extractBF.o extractQUBIC2.o full_graph.o misc.o network_edge_strength.o sample_biclusters.o write_matrix.o -LC:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/lib/i386 -ltbb -ltbbmalloc -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mosbi.buildbin-libdir/00LOCK-mosbi/00new/mosbi/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'mosbi'
    finding HTML links ... done
    NoBFBiclusters                          html  
    algohistogram                           html  
    apply_threshold-bicluster_net-method    html  
    apply_threshold-cooccurrence_net-method
                                            html  
    apply_threshold                         html  
    attr_overlap                            html  
    attributeConnector                      html  
    attribute_graph                         html  
    bicluster-class                         html  
    bicluster_heatmap-bicluster-matrix-method
                                            html  
    bicluster_heatmap                       html  
    bicluster_net-class                     html  
    bicluster_net_to_igraph-bicluster_net-method
                                            html  
    bicluster_net_to_igraph                 html  
    bicluster_network                       html  
    bicluster_to_matrix-matrix-bicluster-method
                                            html  
    bicluster_to_matrix                     html  
    check_names                             html  
    clean_bicluster_list                    html  
    colhistogram                            html  
    cooccurrence_net-class                  html  
    cooccurrence_net_to_igraph-cooccurrence_net-method
                                            html  
    cooccurrence_net_to_igraph              html  
    cpp_matrix_subsetting                   html  
    detect_elements                         html  
    dim-bicluster-method                    html  
    distance_matrix                         html  
    ensemble_biclusters                     html  
    feature_louvain_overlap                 html  
    feature_network                         html  
    filter_bicluster_size                   html  
    filter_biclusters                       html  
    filter_matrix                           html  
    filter_subsets                          html  
    full_graph                              html  
    getAkmbiclustClusters                   html  
    getBFCluster                            html  
    getBicAREbiclusters                     html  
    getBiclustClusters                      html  
    getBiclustpyClusters                    html  
    getFabiaClusters                        html  
    getIsaClusters                          html  
    getQUBIC2biclusters                     html  
    get_adjacency-bicluster_net-method      html  
    get_adjacency                           html  
    get_algorithms                          html  
    get_bic_net_algorithms-bicluster_net-method
                                            html  
    get_bic_net_algorithms                  html  
    get_biclusters                          html  
    get_louvain_communities-bicluster_net-method
                                            html  
    get_louvain_communities-cooccurrence_net-method
                                            html  
    get_louvain_communities                 html  
    getallBFClusters                        html  
    has_names                               html  
    is_subset_or_identical                  html  
    network_edge_strength                   html  
    network_edge_strength_float             html  
    node_size                               html  
    occurance_matrix                        html  
    occurance_table                         html  
    p_overlap                               html  
    p_overlap_2d                            html  
    p_overlap_2d_higher                     html  
    p_overlap_higher                        html  
    plot-bicluster_net-missing-method       html  
    plot-cooccurrence_net-missing-method    html  
    plot_algo_network                       html  
    plot_piechart_bicluster_network         html  
    randomize_matrix                        html  
    replace_threshold                       html  
    replace_values                          html  
    replace_values_float                    html  
    rowhistogram                            html  
    run_akmbiclust                          html  
    run_bimax                               html  
    run_cc                                  html  
    run_fabia                               html  
    run_isa                                 html  
    run_plaid                               html  
    run_qubic                               html  
    run_quest                               html  
    run_spectral                            html  
    run_unibic                              html  
    run_xmotifs                             html  
    sample_biclusters                       html  
    select_biclusters_from_bicluster_network-bicluster_net-list-method
                                            html  
    select_biclusters_from_bicluster_network
                                            html  
    set_bicluster_names-bicluster-matrix-method
                                            html  
    set_bicluster_names                     html  
    similarity_matrix                       html  
    transpose_bicluster                     html  
    validate_bicluster                      html  
    write_graphml                           html  
    write_matrix                            html  
    zero_subsetting                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'mosbi' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c attr_graph.cpp -o attr_graph.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c attributeConnector.cpp -o attributeConnector.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c attribute_overlap.cpp -o attribute_overlap.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bicluster_methods.cpp -o bicluster_methods.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c boost_graph.cpp -o boost_graph.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                               ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graph_traits.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:24,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
                                 ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
                                                                 ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
                               ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
                      ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> & r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> && r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_graph.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
                                      ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function_template.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/maybe_include.hpp:36,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function3.hpp:11,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphviz.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphml.hpp:20,
                 from boost_graph.cpp:3:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp: At global scope:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_graph.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c boost_write.cpp -o boost_write.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/scoped_ptr.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:22,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                               ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graph_traits.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:24,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
                                 ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:250:65: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
                                                                 ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:507:31: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
                               ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:520:22: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
                      ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:603:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> & r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:612:34: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
     shared_ptr & operator=( std::auto_ptr<Y> && r )
                                  ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/property_map.hpp:606,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:27,
                 from boost_write.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function 'boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:614:38: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
                                      ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function_template.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/maybe_include.hpp:36,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/function3.hpp:11,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/property_map/dynamic_property_map.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphviz.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/graphml.hpp:20,
                 from boost_write.cpp:3:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp: At global scope:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/memory:80,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/extensions.hpp:34,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/container_hash/hash.hpp:766,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/functional/hash.hpp:6,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered/unordered_set.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/unordered_set.hpp:17,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/graph/adjacency_list.hpp:20,
                 from boost_write.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c distance_matrix.cpp -o distance_matrix.o
distance_matrix.cpp: In member function 'virtual void SimWorker::operator()(std::size_t, std::size_t)':
distance_matrix.cpp:244:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long long unsigned int'} [-Wsign-compare]
   for(int i=begin;i<end;i++){
                   ~^~~~
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel/TinyThread.h:7,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel.h:6,
                 from distance_matrix.cpp:2:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel/Common.h: In instantiation of 'int RcppParallel::resolveValue(const char*, T, U) [with T = long long unsigned int; U = int]':
C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel.h:57:28:   required from 'void RcppParallel::parallelReduce(std::size_t, std::size_t, Reducer&, std::size_t, int) [with Reducer = SimWorker; std::size_t = long long unsigned int]'
distance_matrix.cpp:278:43:   required from here
C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include/RcppParallel/Common.h:16:23: warning: comparison of integer expressions of different signedness: 'long long unsigned int' and 'int' [-Wsign-compare]
    if (requestedValue != defaultValue && requestedValue > 0)
        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractBF.cpp -o extractBF.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from extractBF.cpp:3:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function.hpp:30,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/split.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:23,
                 from extractBF.cpp:3:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
                 from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
                 from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from extractBF.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
extractBF.cpp: In function 'Rcpp::S4 getBFCluster(Rcpp::String, int)':
extractBF.cpp:92:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
     for(int i=0; i<results.size();i++){
                  ~^~~~~~~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractQUBIC2.cpp -o extractQUBIC2.o
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/iterator_range.hpp:13,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/range/as_literal.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/trim.hpp:19,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:19,
                 from extractQUBIC2.cpp:7:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of 'assert_arg' [-Wparentheses]
 failed ************ (Pred::************
                     ^
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of 'assert_not_arg' [-Wparentheses]
 failed ************ (boost::mpl::not_<Pred>::************
                     ^
In file included from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/bind/mem_fn.hpp:25,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/mem_fn.hpp:22,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function/detail/prologue.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/function.hpp:30,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/detail/find_iterator.hpp:18,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/find_iterator.hpp:24,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/iter_find.hpp:27,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string/split.hpp:16,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/algorithm/string.hpp:23,
                 from extractQUBIC2.cpp:7:
C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include/boost/get_pointer.hpp:48:40: warning: 'template<class> class std::auto_ptr' is deprecated [-Wdeprecated-declarations]
 template<class T> T * get_pointer(std::auto_ptr<T> const& p)
                                        ^~~~~~~~
In file included from C:/rtools40/mingw64/include/c++/8.3.0/bits/locale_conv.h:41,
                 from C:/rtools40/mingw64/include/c++/8.3.0/locale:43,
                 from C:/rtools40/mingw64/include/c++/8.3.0/iomanip:43,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/RcppCommon.h:53,
                 from C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from extractQUBIC2.cpp:2:
C:/rtools40/mingw64/include/c++/8.3.0/bits/unique_ptr.h:53:28: note: declared here
   template<typename> class auto_ptr;
                            ^~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c full_graph.cpp -o full_graph.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c misc.cpp -o misc.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c network_edge_strength.cpp -o network_edge_strength.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c sample_biclusters.cpp -o sample_biclusters.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG  -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/include'   -I"C:/extsoft/include"  -DRCPP_PARALLEL_USE_TBB=1   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c write_matrix.cpp -o write_matrix.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o mosbi.dll tmp.def RcppExports.o attr_graph.o attributeConnector.o attribute_overlap.o bicluster_methods.o boost_graph.o boost_write.o distance_matrix.o extractBF.o extractQUBIC2.o full_graph.o misc.o network_edge_strength.o sample_biclusters.o write_matrix.o -LC:/Users/biocbuild/bbs-3.14-bioc/R/library/RcppParallel/lib/x64 -ltbb -ltbbmalloc -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/mosbi.buildbin-libdir/mosbi/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mosbi' as mosbi_1.0.3.zip
* DONE (mosbi)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'mosbi' successfully unpacked and MD5 sums checked