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This page was generated on 2022-04-13 12:06:51 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for metahdep on tokay2


To the developers/maintainers of the metahdep package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1100/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metahdep 1.52.0  (landing page)
John R. Stevens
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/metahdep
git_branch: RELEASE_3_14
git_last_commit: c335e38
git_last_commit_date: 2021-10-26 11:53:35 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: metahdep
Version: 1.52.0
Command: rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metahdep.buildbin-libdir metahdep_1.52.0.tar.gz
StartedAt: 2022-04-13 06:34:16 -0400 (Wed, 13 Apr 2022)
EndedAt: 2022-04-13 06:34:31 -0400 (Wed, 13 Apr 2022)
EllapsedTime: 15.3 seconds
RetCode: 0
Status:   OK  
PackageFile: metahdep_1.52.0.zip
PackageFileSize: 581.2 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=metahdep.buildbin-libdir metahdep_1.52.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'metahdep' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rinternals.h:620:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
 #define CHAR(x)  R_CHAR(x)
                  ^~~~~~~~~
metahdep.c:471:79: note: in expansion of macro 'CHAR'
     index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
                                                                               ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
 SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
                                                                                                  ~~~~~^~~~~~~~~~~~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metahdep.buildbin-libdir/00LOCK-metahdep/00new/metahdep/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'metahdep'
    finding HTML links ... done
    ES.obj-class                            html  
    HGU.DifExp.list                         html  
    HGU.newnames                            html  
    HGU.prep.list                           html  
    getPLM.es                               html  
    gloss                                   html  
    metahdep.FEMA                           html  
    metahdep.HBLM                           html  
    metahdep.REMA                           html  
    metahdep                                html  
    metahdep.format                         html  
    metahdep.other                          html  
    metaprep-class                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'metahdep' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
C:/Users/BIOCBU~1/BBS-3~1.14-/R/include/Rinternals.h:620:18: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
 #define CHAR(x)  R_CHAR(x)
                  ^~~~~~~~~
metahdep.c:471:79: note: in expansion of macro 'CHAR'
     index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
                                                                               ^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
 SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
                                                                                                  ~~~~~^~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/metahdep.buildbin-libdir/metahdep/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metahdep' as metahdep_1.52.0.zip
* DONE (metahdep)