| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:28 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the discordant package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/discordant.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 517/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| discordant 1.18.0 (landing page) Charlotte Siska
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: discordant |
| Version: 1.18.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/discordant_1.18.0.tar.gz && rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL discordant_1.18.0.zip && rm discordant_1.18.0.tar.gz discordant_1.18.0.zip |
| StartedAt: 2022-04-12 04:33:18 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 04:34:44 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 86.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/discordant_1.18.0.tar.gz && rm -rf discordant.buildbin-libdir && mkdir discordant.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=discordant.buildbin-libdir discordant_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL discordant_1.18.0.zip && rm discordant_1.18.0.tar.gz discordant_1.18.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
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install for i386
* installing *source* package 'discordant' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
~~~~^~
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
~~~~^~
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/discordant.buildbin-libdir/00LOCK-discordant/00new/discordant/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'discordant'
finding HTML links ... done
TCGA_Breast_RNASeq html
TCGA_Breast_RNASeq_voom html
TCGA_Breast_miRNASeq html
TCGA_Breast_miRNASeq_voom html
TCGA_GBM_miRNA_microarray html
TCGA_GBM_transcript_microarray html
createVectors html
discordantRun html
fishersTrans html
split.MADOutlier html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'discordant' ...
** libs
"C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c discordant.c -o discordant.o
discordant.c: In function 'em_normal_partial_concordant':
discordant.c:21:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
~~~~^~
discordant.c:147:13: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
while(flag>0 & iter<(*iteration)){
~~~~^~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o discordant.dll tmp.def discordant.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.14-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.14-bioc/meat/discordant.buildbin-libdir/discordant/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'discordant' as discordant_1.18.0.zip
* DONE (discordant)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'discordant' successfully unpacked and MD5 sums checked