Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:44 -0400 (Wed, 13 Apr 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the caOmicsV package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/caOmicsV.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 245/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
caOmicsV 1.24.0 (landing page) Henry Zhang
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: caOmicsV |
Version: 1.24.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:caOmicsV.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings caOmicsV_1.24.0.tar.gz |
StartedAt: 2022-04-12 11:10:51 -0400 (Tue, 12 Apr 2022) |
EndedAt: 2022-04-12 11:13:10 -0400 (Tue, 12 Apr 2022) |
EllapsedTime: 138.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: caOmicsV.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:caOmicsV.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings caOmicsV_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/caOmicsV.Rcheck’ * using R version 4.1.3 (2022-03-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘caOmicsV/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘caOmicsV’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘caOmicsV’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed bioNetLegend 7.729 0.478 8.229 plotBioNetCircos 7.642 0.419 8.080 plotBioNetHeatmap 5.630 0.254 5.894 drawBioNetNodeBackground 4.755 0.233 5.037 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
caOmicsV.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL caOmicsV ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘caOmicsV’ ... ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (caOmicsV)
caOmicsV.Rcheck/caOmicsV-Ex.timings
name | user | system | elapsed | |
CA_OMICS_ENV | 0.000 | 0.000 | 0.001 | |
CA_OMICS_NAME | 0.001 | 0.001 | 0.001 | |
CA_OMICS_NA_STRING | 0.000 | 0.000 | 0.001 | |
CNVDemoData | 0.023 | 0.008 | 0.031 | |
RNA2miRNA | 0.001 | 0.003 | 0.005 | |
RNASeq | 0.004 | 0.002 | 0.006 | |
RNASeqDemoData | 0.002 | 0.002 | 0.004 | |
bioMatrixLegend | 0.196 | 0.031 | 0.226 | |
bioNetCircosPlot | 1.770 | 0.207 | 1.980 | |
bioNetLegend | 7.729 | 0.478 | 8.229 | |
biomatrixPlotDemoData | 0.002 | 0.003 | 0.006 | |
bionetPlotDemoData | 0.003 | 0.003 | 0.006 | |
convertToZScores | 0.006 | 0.002 | 0.008 | |
drawBioNetNodeBackground | 4.755 | 0.233 | 5.037 | |
eraseBioNetNode | 2.094 | 0.158 | 2.262 | |
getBezierCurve | 0.000 | 0.001 | 0.001 | |
getBioMatrixDataRowTop | 0.001 | 0.000 | 0.001 | |
getBioMatrixPlotParameters | 0.001 | 0.001 | 0.003 | |
getBioNetNodeLinkLine | 0.001 | 0.001 | 0.001 | |
getBioNetParameters | 0.406 | 0.059 | 0.466 | |
getBioNetPlotLocations | 0.370 | 0.026 | 0.396 | |
getBioNetSamplePlotPosition | 0.001 | 0.001 | 0.000 | |
getCaOmicsVColors | 0.001 | 0.000 | 0.001 | |
getCaOmicsVPlotTypes | 0 | 0 | 0 | |
getDefaultNaStrings | 0.000 | 0.000 | 0.001 | |
getHeatmapColorScales | 0.001 | 0.000 | 0.001 | |
getPlotDataSet | 0.020 | 0.011 | 0.030 | |
getPlotOmicsData | 0.013 | 0.003 | 0.016 | |
getPlotSampleData | 0.002 | 0.001 | 0.005 | |
getPlotSummaryData | 0.009 | 0.002 | 0.011 | |
getRelatedPlotData | 0.089 | 0.004 | 0.094 | |
initializeBioMatrixPlot | 0.000 | 0.001 | 0.001 | |
initializeBioNetCircos | 0.361 | 0.041 | 0.403 | |
labelBioNetNodeNames | 1.924 | 0.119 | 2.060 | |
linkBioNetNodes | 1.451 | 0.108 | 1.570 | |
linkBioNetSamples | 1.689 | 0.144 | 1.862 | |
methylDemoData | 0.003 | 0.002 | 0.005 | |
miRNA | 0.003 | 0.002 | 0.005 | |
miRNADemoData | 0.002 | 0.002 | 0.004 | |
plotBioMatrix | 0.832 | 0.020 | 0.857 | |
plotBioMatrixBars | 0.016 | 0.001 | 0.019 | |
plotBioMatrixBinaryData | 0.005 | 0.001 | 0.006 | |
plotBioMatrixCategoryData | 0.005 | 0.001 | 0.006 | |
plotBioMatrixHeatmap | 0.008 | 0.003 | 0.011 | |
plotBioMatrixRowNames | 0.022 | 0.001 | 0.024 | |
plotBioMatrixSampleData | 0.004 | 0.001 | 0.006 | |
plotBioMatrixSampleNames | 0.003 | 0.001 | 0.005 | |
plotBioNetBars | 2.412 | 0.204 | 2.619 | |
plotBioNetCircos | 7.642 | 0.419 | 8.080 | |
plotBioNetHeatmap | 5.630 | 0.254 | 5.894 | |
plotBioNetLines | 3.565 | 0.187 | 3.807 | |
plotBioNetPoints | 3.510 | 0.167 | 3.685 | |
plotBioNetPolygons | 3.590 | 0.179 | 3.782 | |
plotHeatmapColorScale | 1.591 | 0.022 | 1.621 | |
resetBioNetNodePlotAreaBoundary | 0.001 | 0.000 | 0.001 | |
sampleDemoData | 0.002 | 0.002 | 0.003 | |
setBioMatrixBaseCoordinates | 0 | 0 | 0 | |
setBioMatrixPlotArea | 0.002 | 0.001 | 0.003 | |
setBioMatrixPlotParameters | 0.000 | 0.000 | 0.001 | |
setBioNetCircosBasePlotPositions | 0 | 0 | 0 | |
setBioNetNodeLayout | 0.334 | 0.046 | 0.379 | |
setBioNetPlotAreaBackground | 0.504 | 0.078 | 0.582 | |
setBioNetPlotParameters | 0 | 0 | 0 | |
setCaOmicsVColors | 0 | 0 | 0 | |
setDefaultNaStrings | 0.001 | 0.001 | 0.000 | |
showBioMatrixPlotLayout | 0.864 | 0.014 | 0.884 | |
showBioNetNodesLayout | 0.967 | 0.095 | 1.064 | |
showSupportedBioNetCircosPlotType | 0.001 | 0.000 | 0.000 | |
sortClinicalData | 0.002 | 0.003 | 0.005 | |
sortOmicsDataByColumn | 0.003 | 0.003 | 0.006 | |
sortOmicsDataByRow | 0.006 | 0.002 | 0.008 | |