| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:07:24 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SpatialDecon package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpatialDecon.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1846/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SpatialDecon 1.4.3 (landing page) Nicole Ortogero
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SpatialDecon |
| Version: 1.4.3 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SpatialDecon_1.4.3.tar.gz && rm -rf SpatialDecon.buildbin-libdir && mkdir SpatialDecon.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SpatialDecon.buildbin-libdir SpatialDecon_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SpatialDecon_1.4.3.zip && rm SpatialDecon_1.4.3.tar.gz SpatialDecon_1.4.3.zip |
| StartedAt: 2022-04-12 07:33:49 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:35:03 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 74.1 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/SpatialDecon_1.4.3.tar.gz && rm -rf SpatialDecon.buildbin-libdir && mkdir SpatialDecon.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SpatialDecon.buildbin-libdir SpatialDecon_1.4.3.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL SpatialDecon_1.4.3.zip && rm SpatialDecon_1.4.3.tar.gz SpatialDecon_1.4.3.zip
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install for i386
* installing *source* package 'SpatialDecon' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SpatialDecon'
finding HTML links ... done
SpatialDecon-package html
TIL_barplot html
cellcols html
collapseCellTypes html
create_profile_matrix html
derive_GeoMx_background html
download_profile_matrix html
florets html
mean.resid.sd html
mergeTumorIntoX html
mini_geomx_dataset html
mini_singleCell_dataset html
nsclc html
reverseDecon html
runCollapseCellTypes-NanoStringGeoMxSet-method
html
runCollapseCellTypes html
runErrorModel html
runMergeTumorIntoX-NanoStringGeoMxSet-method
html
runMergeTumorIntoX html
runReverseDecon-NanoStringGeoMxSet-method
html
runReverseDecon html
runspatialdecon-NanoStringGeoMxSet-method
html
runspatialdecon-Seurat-method html
runspatialdecon html
safeTME html
safeTME.matches html
spatialdecon html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'SpatialDecon' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SpatialDecon' as SpatialDecon_1.4.3.zip
* DONE (SpatialDecon)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'SpatialDecon' successfully unpacked and MD5 sums checked