Xiuwen Zheng
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/SNPRelate |
| git_branch: RELEASE_3_14 |
| git_last_commit: 8fcd837 |
| git_last_commit_date: 2021-10-26 12:15:42 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:08:49 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the SNPRelate package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SNPRelate.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1831/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SNPRelate 1.28.0 (landing page) Xiuwen Zheng
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SNPRelate |
| Version: 1.28.0 |
| Command: rm -rf SNPRelate.buildbin-libdir && mkdir SNPRelate.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SNPRelate_1.28.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R SNPRelate.buildbin-libdir |
| StartedAt: 2022-04-12 21:32:08 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 21:32:59 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 51.4 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: SNPRelate_1.28.0.tgz |
| PackageFileSize: 3.343 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SNPRelate.buildbin-libdir && mkdir SNPRelate.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SNPRelate_1.28.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R SNPRelate.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SNPRelate.buildbin-libdir SNPRelate_1.28.0.tar.gz' >>>>>>> * installing *source* package ‘SNPRelate’ ... ** using staged installation ** libs clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c ConvToGDS.cpp -o ConvToGDS.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c R_SNPRelate.c -o R_SNPRelate.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c SNPRelate.cpp -o SNPRelate.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c ThreadPool.cpp -o ThreadPool.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c dGenGWAS.cpp -o dGenGWAS.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c dVect.cpp -o dVect.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genBeta.cpp -o genBeta.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genEIGMIX.cpp -o genEIGMIX.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genFst.cpp -o genFst.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genHWE.cpp -o genHWE.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genIBD.cpp -o genIBD.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genIBS.cpp -o genIBS.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genKING.cpp -o genKING.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genLD.cpp -o genLD.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genPCA.cpp -o genPCA.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DUSING_R -I. -I'/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gdsfmt/include' -I/usr/local/include -fPIC -Wall -g -O2 -c genSlideWin.cpp -o genSlideWin.o clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SNPRelate.so ConvToGDS.o R_SNPRelate.o SNPRelate.o ThreadPool.o dGenGWAS.o dVect.o genBeta.o genEIGMIX.o genFst.o genHWE.o genIBD.o genIBS.o genKING.o genLD.o genPCA.o genSlideWin.o -lpthread -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.14-bioc/meat/SNPRelate.buildbin-libdir/00LOCK-SNPRelate/00new/SNPRelate/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SNPRelate) >>>>>>> >>>>>>> FIXING LINKS FOR SNPRelate.buildbin-libdir/SNPRelate/libs/SNPRelate.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs/SNPRelate.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs/SNPRelate.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs/SNPRelate.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs/SNPRelate.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "SNPRelate.buildbin-libdir/SNPRelate/libs/SNPRelate.so"