Nan Xiao
| Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022) |
| git_url: https://git.bioconductor.org/packages/Rcpi |
| git_branch: RELEASE_3_14 |
| git_last_commit: d21a4c1 |
| git_last_commit_date: 2021-10-26 12:12:30 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.14 |
|
This page was generated on 2022-04-13 12:07:11 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the Rcpi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Rcpi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1547/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Rcpi 1.30.0 (landing page) Nan Xiao
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: Rcpi |
| Version: 1.30.0 |
| Command: C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:Rcpi.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Rcpi_1.30.0.tar.gz |
| StartedAt: 2022-04-13 01:18:46 -0400 (Wed, 13 Apr 2022) |
| EndedAt: 2022-04-13 01:22:34 -0400 (Wed, 13 Apr 2022) |
| EllapsedTime: 228.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Rcpi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:Rcpi.install-out.txt --library=C:\Users\biocbuild\bbs-3.14-bioc\R\library --no-vignettes --timings Rcpi_1.30.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.14-bioc/meat/Rcpi.Rcheck'
* using R version 4.1.3 (2022-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rcpi/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Rcpi' version '1.30.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'Rcpi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
calcDrugFPSim 3.05 0.41 15.8
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.14-bioc/meat/Rcpi.Rcheck/00check.log'
for details.
Rcpi.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch Rcpi
###
##############################################################################
##############################################################################
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
* installing *source* package 'Rcpi' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Rcpi'
finding HTML links ... done
AA2DACOR html
AA3DMoRSE html
AAACF html
AABLOSUM100 html
AABLOSUM45 html
AABLOSUM50 html
AABLOSUM62 html
AABLOSUM80 html
AABurden html
AACPSA html
AAConn html
AAConst html
AADescAll html
AAEdgeAdj html
AAEigIdx html
AAFGC html
AAGETAWAY html
AAGeom html
AAInfo html
AAMOE2D html
AAMOE3D html
AAMetaInfo html
AAMolProp html
AAPAM120 html
AAPAM250 html
AAPAM30 html
AAPAM40 html
AAPAM70 html
AARDF html
AARandic html
AATopo html
AATopoChg html
AAWHIM html
AAWalk html
AAindex html
OptAA3d html
Rcpi-package html
acc html
calcDrugFPSim html
calcDrugMCSSim html
calcParProtGOSim html
calcParProtSeqSim html
calcTwoProtGOSim html
calcTwoProtSeqSim html
checkProt html
convMolFormat html
extractDrugAIO html
extractDrugALOGP html
extractDrugAminoAcidCount html
extractDrugApol html
extractDrugAromaticAtomsCount html
extractDrugAromaticBondsCount html
extractDrugAtomCount html
extractDrugAutocorrelationCharge html
extractDrugAutocorrelationMass html
extractDrugAutocorrelationPolarizability
html
extractDrugBCUT html
extractDrugBPol html
extractDrugBondCount html
extractDrugCPSA html
extractDrugCarbonTypes html
extractDrugChiChain html
extractDrugChiCluster html
extractDrugChiPath html
extractDrugChiPathCluster html
extractDrugDescOB html
extractDrugECI html
extractDrugEstate html
extractDrugEstateComplete html
extractDrugExtended html
extractDrugExtendedComplete html
extractDrugFMF html
extractDrugFragmentComplexity html
extractDrugGraph html
extractDrugGraphComplete html
extractDrugGravitationalIndex html
extractDrugHBondAcceptorCount html
extractDrugHBondDonorCount html
extractDrugHybridization html
extractDrugHybridizationComplete html
extractDrugHybridizationRatio html
extractDrugIPMolecularLearning html
extractDrugKR html
extractDrugKRComplete html
extractDrugKappaShapeIndices html
extractDrugKierHallSmarts html
extractDrugLargestChain html
extractDrugLargestPiSystem html
extractDrugLengthOverBreadth html
extractDrugLongestAliphaticChain html
extractDrugMACCS html
extractDrugMACCSComplete html
extractDrugMDE html
extractDrugMannholdLogP html
extractDrugMomentOfInertia html
extractDrugOBFP2 html
extractDrugOBFP3 html
extractDrugOBFP4 html
extractDrugOBMACCS html
extractDrugPetitjeanNumber html
extractDrugPetitjeanShapeIndex html
extractDrugPubChem html
extractDrugPubChemComplete html
extractDrugRotatableBondsCount html
extractDrugRuleOfFive html
extractDrugShortestPath html
extractDrugShortestPathComplete html
extractDrugStandard html
extractDrugStandardComplete html
extractDrugTPSA html
extractDrugVABC html
extractDrugVAdjMa html
extractDrugWHIM html
extractDrugWeight html
extractDrugWeightedPath html
extractDrugWienerNumbers html
extractDrugXLogP html
extractDrugZagrebIndex html
extractPCMBLOSUM html
extractPCMDescScales html
extractPCMFAScales html
extractPCMMDSScales html
extractPCMPropScales html
extractPCMScales html
extractProtAAC html
extractProtAPAAC html
extractProtCTDC html
extractProtCTDD html
extractProtCTDT html
extractProtCTriad html
extractProtDC html
extractProtGeary html
extractProtMoran html
extractProtMoreauBroto html
extractProtPAAC html
extractProtPSSM html
extractProtPSSMAcc html
extractProtPSSMFeature html
extractProtQSO html
extractProtSOCN html
extractProtTC html
getCPI html
getDrug html
getFASTAFromKEGG html
getFASTAFromUniProt html
getMolFromCAS html
getMolFromChEMBL html
getMolFromDrugBank html
getMolFromKEGG html
getMolFromPubChem html
getPDBFromRCSBPDB html
getPPI html
getProt html
getSeqFromKEGG html
getSeqFromRCSBPDB html
getSeqFromUniProt html
getSmiFromChEMBL html
getSmiFromDrugBank html
getSmiFromKEGG html
getSmiFromPubChem html
readFASTA html
readMolFromSDF html
readMolFromSmi html
readPDB html
searchDrug html
segProt html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rcpi)
Making 'packages.html' ... done
Rcpi.Rcheck/tests/runTests.Rout
R version 4.1.3 (2022-03-10) -- "One Push-Up"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('Rcpi')
RUNIT TEST PROTOCOL -- Wed Apr 13 01:22:21 2022
***********************************************
Number of test functions: 11
Number of errors: 0
Number of failures: 0
1 Test Suite :
Rcpi RUnit Tests - 11 test functions, 0 errors, 0 failures
Number of test functions: 11
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
7.45 0.65 7.62
Rcpi.Rcheck/Rcpi-Ex.timings
| name | user | system | elapsed | |
| AA2DACOR | 0 | 0 | 0 | |
| AA3DMoRSE | 0 | 0 | 0 | |
| AAACF | 0 | 0 | 0 | |
| AABLOSUM100 | 0 | 0 | 0 | |
| AABLOSUM45 | 0.02 | 0.00 | 0.02 | |
| AABLOSUM50 | 0 | 0 | 0 | |
| AABLOSUM62 | 0 | 0 | 0 | |
| AABLOSUM80 | 0.00 | 0.02 | 0.01 | |
| AABurden | 0 | 0 | 0 | |
| AACPSA | 0 | 0 | 0 | |
| AAConn | 0.01 | 0.00 | 0.02 | |
| AAConst | 0 | 0 | 0 | |
| AADescAll | 0 | 0 | 0 | |
| AAEdgeAdj | 0.00 | 0.01 | 0.01 | |
| AAEigIdx | 0 | 0 | 0 | |
| AAFGC | 0 | 0 | 0 | |
| AAGETAWAY | 0.00 | 0.02 | 0.02 | |
| AAGeom | 0 | 0 | 0 | |
| AAInfo | 0 | 0 | 0 | |
| AAMOE2D | 0.00 | 0.01 | 0.01 | |
| AAMOE3D | 0 | 0 | 0 | |
| AAMetaInfo | 0 | 0 | 0 | |
| AAMolProp | 0.00 | 0.02 | 0.02 | |
| AAPAM120 | 0 | 0 | 0 | |
| AAPAM250 | 0 | 0 | 0 | |
| AAPAM30 | 0.00 | 0.01 | 0.01 | |
| AAPAM40 | 0 | 0 | 0 | |
| AAPAM70 | 0 | 0 | 0 | |
| AARDF | 0 | 0 | 0 | |
| AARandic | 0.00 | 0.02 | 0.02 | |
| AATopo | 0 | 0 | 0 | |
| AATopoChg | 0 | 0 | 0 | |
| AAWHIM | 0.00 | 0.01 | 0.02 | |
| AAWalk | 0 | 0 | 0 | |
| AAindex | 0 | 0 | 0 | |
| OptAA3d | 0 | 0 | 0 | |
| acc | 0.02 | 0.00 | 0.01 | |
| calcDrugFPSim | 3.05 | 0.41 | 15.80 | |
| calcDrugMCSSim | 0.00 | 0.00 | 0.03 | |
| calcParProtGOSim | 0 | 0 | 0 | |
| calcParProtSeqSim | 0.01 | 0.00 | 0.02 | |
| calcTwoProtGOSim | 0 | 0 | 0 | |
| calcTwoProtSeqSim | 0 | 0 | 0 | |
| checkProt | 0.00 | 0.02 | 0.01 | |
| convMolFormat | 0 | 0 | 0 | |
| extractDrugAIO | 0 | 0 | 0 | |
| extractDrugALOGP | 0 | 0 | 0 | |
| extractDrugAminoAcidCount | 0 | 0 | 0 | |
| extractDrugApol | 0 | 0 | 0 | |
| extractDrugAromaticAtomsCount | 0 | 0 | 0 | |
| extractDrugAromaticBondsCount | 0 | 0 | 0 | |
| extractDrugAtomCount | 0 | 0 | 0 | |
| extractDrugAutocorrelationCharge | 0 | 0 | 0 | |
| extractDrugAutocorrelationMass | 0 | 0 | 0 | |
| extractDrugAutocorrelationPolarizability | 0 | 0 | 0 | |
| extractDrugBCUT | 0 | 0 | 0 | |
| extractDrugBPol | 0 | 0 | 0 | |
| extractDrugBondCount | 0 | 0 | 0 | |
| extractDrugCPSA | 0 | 0 | 0 | |
| extractDrugCarbonTypes | 0 | 0 | 0 | |
| extractDrugChiChain | 0.02 | 0.00 | 0.02 | |
| extractDrugChiCluster | 0 | 0 | 0 | |
| extractDrugChiPath | 0 | 0 | 0 | |
| extractDrugChiPathCluster | 0 | 0 | 0 | |
| extractDrugDescOB | 0 | 0 | 0 | |
| extractDrugECI | 0.02 | 0.00 | 0.01 | |
| extractDrugEstate | 0 | 0 | 0 | |
| extractDrugEstateComplete | 0 | 0 | 0 | |
| extractDrugExtended | 0 | 0 | 0 | |
| extractDrugExtendedComplete | 0 | 0 | 0 | |
| extractDrugFMF | 0 | 0 | 0 | |
| extractDrugFragmentComplexity | 0 | 0 | 0 | |
| extractDrugGraph | 0.01 | 0.00 | 0.02 | |
| extractDrugGraphComplete | 0 | 0 | 0 | |
| extractDrugGravitationalIndex | 0 | 0 | 0 | |
| extractDrugHBondAcceptorCount | 0 | 0 | 0 | |
| extractDrugHBondDonorCount | 0 | 0 | 0 | |
| extractDrugHybridization | 0 | 0 | 0 | |
| extractDrugHybridizationComplete | 0 | 0 | 0 | |
| extractDrugHybridizationRatio | 0 | 0 | 0 | |
| extractDrugIPMolecularLearning | 0 | 0 | 0 | |
| extractDrugKR | 0 | 0 | 0 | |
| extractDrugKRComplete | 0 | 0 | 0 | |
| extractDrugKappaShapeIndices | 0 | 0 | 0 | |
| extractDrugKierHallSmarts | 0 | 0 | 0 | |
| extractDrugLargestChain | 0 | 0 | 0 | |
| extractDrugLargestPiSystem | 0 | 0 | 0 | |
| extractDrugLengthOverBreadth | 0 | 0 | 0 | |
| extractDrugLongestAliphaticChain | 0 | 0 | 0 | |
| extractDrugMACCS | 0 | 0 | 0 | |
| extractDrugMACCSComplete | 0 | 0 | 0 | |
| extractDrugMDE | 0 | 0 | 0 | |
| extractDrugMannholdLogP | 0.02 | 0.00 | 0.02 | |
| extractDrugMomentOfInertia | 0 | 0 | 0 | |
| extractDrugOBFP2 | 0 | 0 | 0 | |
| extractDrugOBFP3 | 0.01 | 0.00 | 0.01 | |
| extractDrugOBFP4 | 0 | 0 | 0 | |
| extractDrugOBMACCS | 0 | 0 | 0 | |
| extractDrugPetitjeanNumber | 0 | 0 | 0 | |
| extractDrugPetitjeanShapeIndex | 0.01 | 0.00 | 0.01 | |
| extractDrugPubChem | 0 | 0 | 0 | |
| extractDrugPubChemComplete | 0 | 0 | 0 | |
| extractDrugRotatableBondsCount | 0 | 0 | 0 | |
| extractDrugRuleOfFive | 0 | 0 | 0 | |
| extractDrugShortestPath | 0 | 0 | 0 | |
| extractDrugShortestPathComplete | 0 | 0 | 0 | |
| extractDrugStandard | 0 | 0 | 0 | |
| extractDrugStandardComplete | 0 | 0 | 0 | |
| extractDrugTPSA | 0 | 0 | 0 | |
| extractDrugVABC | 0 | 0 | 0 | |
| extractDrugVAdjMa | 0 | 0 | 0 | |
| extractDrugWHIM | 0 | 0 | 0 | |
| extractDrugWeight | 0 | 0 | 0 | |
| extractDrugWeightedPath | 0 | 0 | 0 | |
| extractDrugWienerNumbers | 0 | 0 | 0 | |
| extractDrugXLogP | 0 | 0 | 0 | |
| extractDrugZagrebIndex | 0 | 0 | 0 | |
| extractPCMBLOSUM | 0.02 | 0.00 | 0.02 | |
| extractPCMDescScales | 0.00 | 0.02 | 0.02 | |
| extractPCMFAScales | 0.01 | 0.01 | 0.03 | |
| extractPCMMDSScales | 0.03 | 0.00 | 0.03 | |
| extractPCMPropScales | 0.02 | 0.00 | 0.01 | |
| extractPCMScales | 0.03 | 0.02 | 0.05 | |
| extractProtAAC | 0 | 0 | 0 | |
| extractProtAPAAC | 1.16 | 0.00 | 1.23 | |
| extractProtCTDC | 0 | 0 | 0 | |
| extractProtCTDD | 0 | 0 | 0 | |
| extractProtCTDT | 0.01 | 0.00 | 0.02 | |
| extractProtCTriad | 0.11 | 0.03 | 0.14 | |
| extractProtDC | 0.02 | 0.00 | 0.02 | |
| extractProtGeary | 0.22 | 0.00 | 0.22 | |
| extractProtMoran | 0.17 | 0.00 | 0.17 | |
| extractProtMoreauBroto | 0.15 | 0.00 | 0.15 | |
| extractProtPAAC | 0.41 | 0.00 | 0.41 | |
| extractProtPSSM | 0 | 0 | 0 | |
| extractProtPSSMAcc | 0 | 0 | 0 | |
| extractProtPSSMFeature | 0 | 0 | 0 | |
| extractProtQSO | 0.86 | 0.00 | 0.86 | |
| extractProtSOCN | 0.78 | 0.00 | 0.78 | |
| extractProtTC | 0.03 | 0.03 | 0.06 | |
| getCPI | 0 | 0 | 0 | |
| getDrug | 0 | 0 | 0 | |
| getFASTAFromKEGG | 0 | 0 | 0 | |
| getFASTAFromUniProt | 0 | 0 | 0 | |
| getMolFromCAS | 0 | 0 | 0 | |
| getMolFromChEMBL | 0 | 0 | 0 | |
| getMolFromDrugBank | 0 | 0 | 0 | |
| getMolFromKEGG | 0 | 0 | 0 | |
| getMolFromPubChem | 0 | 0 | 0 | |
| getPDBFromRCSBPDB | 0 | 0 | 0 | |
| getPPI | 0 | 0 | 0 | |
| getProt | 0 | 0 | 0 | |
| getSeqFromKEGG | 0 | 0 | 0 | |
| getSeqFromRCSBPDB | 0 | 0 | 0 | |
| getSeqFromUniProt | 0 | 0 | 0 | |
| getSmiFromChEMBL | 0 | 0 | 0 | |
| getSmiFromDrugBank | 0 | 0 | 0 | |
| getSmiFromKEGG | 0 | 0 | 0 | |
| getSmiFromPubChem | 0 | 0 | 0 | |
| readFASTA | 0 | 0 | 0 | |
| readMolFromSDF | 0 | 0 | 0 | |
| readMolFromSmi | 0.00 | 0.02 | 0.02 | |
| readPDB | 1.25 | 0.00 | 1.47 | |
| searchDrug | 0 | 0 | 0 | |
| segProt | 0 | 0 | 0 | |