| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:36 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the GeneAccord package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneAccord.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 716/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GeneAccord 1.12.0 (landing page) Ariane L. Moore
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GeneAccord |
| Version: 1.12.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GeneAccord_1.12.0.tar.gz && rm -rf GeneAccord.buildbin-libdir && mkdir GeneAccord.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAccord.buildbin-libdir GeneAccord_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GeneAccord_1.12.0.zip && rm GeneAccord_1.12.0.tar.gz GeneAccord_1.12.0.zip |
| StartedAt: 2022-04-12 07:22:02 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 07:24:41 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 159.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GeneAccord_1.12.0.tar.gz && rm -rf GeneAccord.buildbin-libdir && mkdir GeneAccord.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAccord.buildbin-libdir GeneAccord_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GeneAccord_1.12.0.zip && rm GeneAccord_1.12.0.tar.gz GeneAccord_1.12.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
45 2740k 45 1258k 0 0 1249k 0 0:00:02 0:00:01 0:00:01 1250k
100 2740k 100 2740k 0 0 1631k 0 0:00:01 0:00:01 --:--:-- 1632k
install for i386
* installing *source* package 'GeneAccord' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GeneAccord'
finding HTML links ... done
GeneAccord html
all_genes_tbl html
avg_rates_m html
build_null_test_statistic html
clone_tbl_all_pats_all_trees html
compute_rates_clon_excl html
compute_test_stat_avg_rate html
convert_ensembl_to_reactome_pw_tbl html
create_ensembl_gene_tbl_hg html
create_tbl_ent_clones html
create_tbl_tree_collection html
ecdf_list html
ecdf_lr_test_clon_excl_avg_rate html
ensembl_to_hgnc html
ensembl_to_reactome html
ensg_reactome_path_map html
ensmusg_reactome_path_map html
extract_num_clones_tbl html
generate_ecdf_test_stat html
generate_test_stat_hist html
get_hist_clon_excl html
get_hist_clon_excl_this_pat_this_pair html
get_rate_diff_branch_ent_pair html
heatmap_clones_gene_pat html
hgnc_to_ensembl html
is_diff_branch_ent_pair html
list_of_clon_excl_all_pats html
list_of_num_trees_all_pats html
map_pairs_to_hgnc_symbols html
merge_clones_identical_ents html
pairs_in_patients_hist html
plot_ecdf_test_stat html
plot_rates_clon_excl html
take_pairs_and_get_patients html
vis_pval_distr_num_pat html
write_res_pairs_to_disk html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GeneAccord' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GeneAccord' as GeneAccord_1.12.0.zip
* DONE (GeneAccord)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GeneAccord' successfully unpacked and MD5 sums checked