| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:41 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the GWASTools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GWASTools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 847/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GWASTools 1.40.0 (landing page) Stephanie M. Gogarten
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: GWASTools |
| Version: 1.40.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GWASTools_1.40.0.tar.gz && rm -rf GWASTools.buildbin-libdir && mkdir GWASTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GWASTools.buildbin-libdir GWASTools_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GWASTools_1.40.0.zip && rm GWASTools_1.40.0.tar.gz GWASTools_1.40.0.zip |
| StartedAt: 2022-04-12 06:39:24 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:44:15 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 291.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/GWASTools_1.40.0.tar.gz && rm -rf GWASTools.buildbin-libdir && mkdir GWASTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GWASTools.buildbin-libdir GWASTools_1.40.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL GWASTools_1.40.0.zip && rm GWASTools_1.40.0.tar.gz GWASTools_1.40.0.zip
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install for i386
* installing *source* package 'GWASTools' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'GWASTools'
finding HTML links ... done
BAFfromClusterMeans html
finding level-2 HTML links ... done
BAFfromGenotypes html
GWASTools-package html
GdsGenotypeReader-class html
GdsIntensityReader-class html
GdsReader-class html
GenotypeData-class html
GenotypeIterator-class html
HLA html
IntensityData-class html
MatrixGenotypeReader-class html
NcdfGenotypeReader-class html
NcdfIntensityReader-class html
NcdfReader-class html
ScanAnnotationDataFrame-class html
ScanAnnotationSQLite-class html
SnpAnnotationDataFrame-class html
SnpAnnotationSQLite-class html
alleleFrequency html
allequal html
anomDetectBAF html
anomDetectLOH html
anomIdentifyLowQuality html
anomSegStats html
apartSnpSelection html
assocCoxPH html
assocRegression html
batchTest html
centromeres html
chromIntensityPlot html
convertNcdfGds html
createDataFile html
defunct html
duplicateDiscordance html
duplicateDiscordanceAcrossDatasets html
duplicateDiscordanceProbability html
exactHWE html
findBAFvariance html
gdsSubset html
genoClusterPlot html
genotypeToCharacter html
getVariable html
getobj html
hetByScanChrom html
hetBySnpSex html
ibdPlot html
imputedDosageFile html
intensityOutliersPlot html
manhattanPlot html
meanIntensityByScanChrom html
mendelErr html
mendelList html
missingGenotypeByScanChrom html
missingGenotypeBySnpSex html
pasteSorted html
pcaSnpFilters html
pedigreeCheck html
pedigreeDeleteDuplicates html
pedigreeMaxUnrelated html
pedigreePairwiseRelatedness html
plinkUtils html
pseudoautoIntensityPlot html
pseudoautosomal html
qqPlot html
qualityScoreByScan html
qualityScoreBySnp html
readWriteFirst html
relationsMeanVar html
saveas html
setMissingGenotypes html
simulateGenotypeMatrix html
snpCorrelationPlot html
snpStats html
vcfWrite html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GWASTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GWASTools' as GWASTools_1.40.0.zip
* DONE (GWASTools)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'GWASTools' successfully unpacked and MD5 sums checked