Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:27 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for DEqMS on tokay2


To the developers/maintainers of the DEqMS package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DEqMS.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 489/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
DEqMS 1.12.1  (landing page)
Yafeng Zhu
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/DEqMS
git_branch: RELEASE_3_14
git_last_commit: fa586ec
git_last_commit_date: 2022-01-18 05:39:00 -0400 (Tue, 18 Jan 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    ERROR  skippedskipped
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: DEqMS
Version: 1.12.1
Command: chmod a+r DEqMS -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DEqMS
StartedAt: 2022-04-12 09:33:28 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 09:34:17 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 48.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r DEqMS -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data DEqMS
###
##############################################################################
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* checking for file 'DEqMS/DESCRIPTION' ... OK
* preparing 'DEqMS':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'DEqMS-package-vignette.Rmd' using rmarkdown
trying URL 'https://ftp.ebi.ac.uk/pride-archive/2016/06/PXD004163/Yan_miR_Protein_table.flatprottable.txt'
Quitting from lines 64-69 (DEqMS-package-vignette.Rmd) 
Error: processing vignette 'DEqMS-package-vignette.Rmd' failed with diagnostics:
cannot open URL 'https://ftp.ebi.ac.uk/pride-archive/2016/06/PXD004163/Yan_miR_Protein_table.flatprottable.txt'
--- failed re-building 'DEqMS-package-vignette.Rmd'

SUMMARY: processing the following file failed:
  'DEqMS-package-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted