Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2022-04-13 12:06:15 -0400 (Wed, 13 Apr 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.1.3 (2022-03-10) -- "One Push-Up" 4324
tokay2Windows Server 2012 R2 Standardx644.1.3 (2022-03-10) -- "One Push-Up" 4077
machv2macOS 10.14.6 Mojavex86_644.1.3 (2022-03-10) -- "One Push-Up" 4137
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for BioTIP on tokay2


To the developers/maintainers of the BioTIP package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioTIP.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 194/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioTIP 1.8.0  (landing page)
Yuxi (Jennifer) Sun , Zhezhen Wang , and X Holly Yang
Snapshot Date: 2022-04-12 01:55:07 -0400 (Tue, 12 Apr 2022)
git_url: https://git.bioconductor.org/packages/BioTIP
git_branch: RELEASE_3_14
git_last_commit: b7c8488
git_last_commit_date: 2021-10-26 12:54:40 -0400 (Tue, 26 Oct 2021)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: BioTIP
Version: 1.8.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BioTIP_1.8.0.tar.gz && rm -rf BioTIP.buildbin-libdir && mkdir BioTIP.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioTIP.buildbin-libdir BioTIP_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BioTIP_1.8.0.zip && rm BioTIP_1.8.0.tar.gz BioTIP_1.8.0.zip
StartedAt: 2022-04-12 05:46:27 -0400 (Tue, 12 Apr 2022)
EndedAt: 2022-04-12 05:47:19 -0400 (Tue, 12 Apr 2022)
EllapsedTime: 52.0 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/BioTIP_1.8.0.tar.gz && rm -rf BioTIP.buildbin-libdir && mkdir BioTIP.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BioTIP.buildbin-libdir BioTIP_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL BioTIP_1.8.0.zip && rm BioTIP_1.8.0.tar.gz BioTIP_1.8.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 14 6112k   14  906k    0     0  1155k      0  0:00:05 --:--:--  0:00:05 1155k
 49 6112k   49 3025k    0     0  1695k      0  0:00:03  0:00:01  0:00:02 1694k
 99 6112k   99 6094k    0     0  2187k      0  0:00:02  0:00:02 --:--:-- 2187k
100 6112k  100 6112k    0     0  2193k      0  0:00:02  0:00:02 --:--:-- 2193k

install for i386

* installing *source* package 'BioTIP' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'BioTIP'
    finding HTML links ... done
    BioTIP-package                          html  
    GSE6136_cli                             html  
    GSE6136_matrix                          html  
    ILEF                                    html  
    avg.cor.shrink                          html  
    cod                                     html  
    cor.shrink                              html  
    gencode                                 html  
    getBiotypes                             html  
    getCTS                                  html  
    getCluster_methods                      html  
    getIc                                   html  
    getIc.new                               html  
    getMCI                                  html  
    finding level-2 HTML links ... done

    getMCI_inner                            html  
    getMaxMCImember                         html  
    getMaxStats                             html  
    getNetwork                              html  
    getReadthrough                          html  
    intron                                  html  
    optimize.sd_selection                   html  
    plotBar_MCI                             html  
    plotIc                                  html  
    plotMaxMCI                              html  
    plot_Ic_Simulation                      html  
    plot_MCI_Simulation                     html  
    plot_SS_Simulation                      html  
    sd_selection                            html  
    simulationMCI                           html  
    simulation_Ic                           html  
    simulation_Ic_sample                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'BioTIP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BioTIP' as BioTIP_1.8.0.zip
* DONE (BioTIP)
* installing to library 'C:/Users/biocbuild/bbs-3.14-bioc/R/library'
package 'BioTIP' successfully unpacked and MD5 sums checked