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This page was generated on 2021-10-16 15:58:40 -0400 (Sat, 16 Oct 2021).

BUILD results for gskb on malbec2

To the developers/maintainers of the gskb package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 155/406HostnameOS / ArchINSTALLBUILDCHECK
gskb 1.24.0  (landing page)
Valerie Bares
Snapshot Date: 2021-10-16 09:30:07 -0400 (Sat, 16 Oct 2021)
git_url: https://git.bioconductor.org/packages/gskb
git_branch: RELEASE_3_13
git_last_commit: fd563da
git_last_commit_date: 2021-05-19 11:51:10 -0400 (Wed, 19 May 2021)
malbec2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    ERROR  skipped

Summary

Package: gskb
Version: 1.24.0
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gskb
StartedAt: 2021-10-16 12:06:21 -0400 (Sat, 16 Oct 2021)
EndedAt: 2021-10-16 12:06:25 -0400 (Sat, 16 Oct 2021)
EllapsedTime: 3.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data gskb
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* checking for file ‘gskb/DESCRIPTION’ ... OK
* preparing ‘gskb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘gskb.Rnw’ using Sweave
Warning: Package 'gskb' is deprecated and will be removed from Bioconductor
  version 3.14

Error: processing vignette 'gskb.Rnw' failed with diagnostics:
 chunk 5 
Error in library(PGSEA) : there is no package called ‘PGSEA’

--- failed re-building ‘gskb.Rnw’

SUMMARY: processing the following file failed:
  ‘gskb.Rnw’

Error: Vignette re-building failed.
Execution halted