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This page was generated on 2021-10-16 15:58:43 -0400 (Sat, 16 Oct 2021).
To the developers/maintainers of the RNAinteractMAPK package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 313/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
RNAinteractMAPK 1.30.0 (landing page) Mike Smith
| malbec2 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: RNAinteractMAPK |
Version: 1.30.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:RNAinteractMAPK.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings RNAinteractMAPK_1.30.0.tar.gz |
StartedAt: 2021-10-16 13:51:25 -0400 (Sat, 16 Oct 2021) |
EndedAt: 2021-10-16 13:54:01 -0400 (Sat, 16 Oct 2021) |
EllapsedTime: 156.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RNAinteractMAPK.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:RNAinteractMAPK.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings RNAinteractMAPK_1.30.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-data-experiment/meat/RNAinteractMAPK.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RNAinteractMAPK/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RNAinteractMAPK’ version ‘1.30.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RNAinteractMAPK’ can be installed ... OK * checking installed package size ... NOTE installed size is 10.4Mb sub-directories of 1Mb or more: data 6.7Mb extdata 3.6Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘genefilter’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.13-data-experiment/meat/RNAinteractMAPK.Rcheck/00check.log’ for details.
RNAinteractMAPK.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL RNAinteractMAPK ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘RNAinteractMAPK’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RNAinteractMAPK)
RNAinteractMAPK.Rcheck/RNAinteractMAPK-Ex.timings
name | user | system | elapsed | |
Dmel2PPMAPK | 1.315 | 0.008 | 1.322 | |
ElpB1phenotype | 0.000 | 0.004 | 0.003 | |
Networks | 0.003 | 0.000 | 0.003 | |
PhysicalInteractions | 0.001 | 0.000 | 0.002 | |
RNAinteractMAPK-package | 0.823 | 0.012 | 0.836 | |
cellTiterGlo | 0.003 | 0.000 | 0.003 | |
dsRNAiDilutionSeriesData | 0.030 | 0.016 | 0.045 | |
mRNAdoubleKDefficiency | 0.003 | 0.000 | 0.002 | |
mRNAsingleKDefficiency | 0.002 | 0.000 | 0.002 | |
pathwayMembership | 0.001 | 0.000 | 0.001 | |
singleKDphenotype | 0.005 | 0.000 | 0.005 | |