Back to Long Tests report for BioC 3.13 |
This page was generated on 2021-12-11 17:30:01 -0500 (Sat, 11 Dec 2021).
To the developers/maintainers of the biodbUniprot package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 9/20 | Hostname | OS / Arch | CHECK | |||||||
biodbUniprot 1.1.0 (landing page) Pierrick Roger
| rex3 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | |||||||
Package: biodbUniprot |
Version: 1.1.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbUniprot_1.1.0.tar.gz |
StartedAt: 2021-12-11 09:30:25 -0500 (Sat, 11 Dec 2021) |
EndedAt: 2021-12-11 09:47:48 -0500 (Sat, 11 Dec 2021) |
EllapsedTime: 1042.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: biodbUniprot.Rcheck |
Warnings: 0 |
biodbUniprot.Rcheck/tests/testthat.Rout
R Under development (unstable) (2021-02-10 r79979) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # Script needed to run testthat automatically from ‘R CMD check’. See > # testthat::test_dir documentation. > library(testthat) > library(biodbUniprot) > Sys.setenv(TESTTHAT_REPORTER="summary") > test_check("biodbUniprot") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 3138 ] > > proc.time() user system elapsed 270.047 6.820 1015.613
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbUniprot_1.1.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc-longtests/meat/biodbUniprot.Rcheck’ * using R Under development (unstable) (2021-02-10 r79979) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’ * checking for file ‘biodbUniprot/DESCRIPTION’ ... OK * this is package ‘biodbUniprot’ version ‘1.1.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘biodbUniprot’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... SKIPPED * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... SKIPPED * checking examples ... SKIPPED * checking for unstated dependencies in ‘longtests’ ... OK * checking tests in ‘longtests’ ... Running ‘testthat.R’ OK * DONE Status: OK
biodbUniprot.Rcheck/00install.out
* installing *source* package ‘biodbUniprot’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbUniprot)