Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:04 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the fcoex package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcoex.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 623/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
fcoex 1.6.0 (landing page) Tiago Lubiana
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: fcoex |
Version: 1.6.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fcoex.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings fcoex_1.6.0.tar.gz |
StartedAt: 2021-10-14 23:05:04 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 23:12:11 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 427.1 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: fcoex.Rcheck |
Warnings: 2 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fcoex.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings fcoex_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/fcoex.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'fcoex/DESCRIPTION' ... OK * this is package 'fcoex' version '1.6.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'fcoex' can be installed ... WARNING Found the following significant warnings: Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/fcoex.Rcheck/00install.out' for details. * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Documented arguments not in \usage in documentation object '.plot_one_interaction': '...' Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed find_cbf_modules 19.32 0.54 19.86 get_nets 18.72 0.19 18.91 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed find_cbf_modules 18.88 0.21 19.08 get_nets 18.36 0.09 18.45 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 WARNINGs See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/fcoex.Rcheck/00check.log' for details.
fcoex.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/fcoex_1.6.0.tar.gz && rm -rf fcoex.buildbin-libdir && mkdir fcoex.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fcoex.buildbin-libdir fcoex_1.6.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL fcoex_1.6.0.zip && rm fcoex_1.6.0.tar.gz fcoex_1.6.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 943k 100 943k 0 0 1622k 0 --:--:-- --:--:-- --:--:-- 1626k install for i386 * installing *source* package 'fcoex' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' in method for 'mod_ora' with signature '"fcoex"': no definition for class "fcoex" ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' in method for 'mod_ora' with signature '"fcoex"': no definition for class "fcoex" ** help *** installing help indices converting help for package 'fcoex' finding HTML links ... done discretize html dot-get_correlates html fc html fcoex-class html find_cbf_modules html get_nets html idents html mini_pbmc3k html mod_colors html mod_gene_num html mod_names html mod_ora html module_genes html new_fcoex html nmodules html ora_data html plot_one_interaction html plot_ora html plot_ora_single html recluster html save_plots html show-fcoex-method html show_net html show_ora html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' ** testing if installed package can be loaded from final location Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'fcoex' ... ** testing if installed package can be loaded Warning: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' * MD5 sums packaged installation of 'fcoex' as fcoex_1.6.0.zip * DONE (fcoex) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'fcoex' successfully unpacked and MD5 sums checked
fcoex.Rcheck/tests_i386/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(fcoex) Warning message: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' > > test_check("fcoex") [1] 0.1 [1] "Number of features features = 40" [1] "Number of prospective features = 14" Round 1 [1] "first_prime round ( |s_prime| = 14 )" 0.1867632 0.1586357 Removed feature 13 0.1256985 0.1198729 Removed feature 38 0.1168656 0.1068907 Removed feature 18 0.2045022 0.09770198 Removed feature 34 0.1736622 0.08930267 Removed feature 32 Round 2 [1] "first_prime round ( |s_prime| = 9 )" 0.2161864 0.1610819 Removed feature 39 Round 3 [1] "first_prime round ( |s_prime| = 8 )" 0.128325 0.1124689 Removed feature 30 Round 4 [1] "first_prime round ( |s_prime| = 7 )" Round 5 [1] "first_prime round ( |s_prime| = 7 )" Round 6 [1] "first_prime round ( |s_prime| = 7 )" Round 7 [1] "first_prime round ( |s_prime| = 7 )" [1] "Number of final features = 7" [1] "Gene-1" [1] "Gene-40" [1] "Gene-28" [1] "Gene-39" [1] "Gene-13" [1] "Gene-26" [1] "Gene-12" [1] "Gene-25" [1] "Gene-38" [1] "Gene-35" [1] "Gene-30" [1] "Gene-18" [1] "Gene-34" [1] "Gene-32" [1] "Gene-1" [1] "Gene-40" [1] "Gene-28" [1] "Gene-26" [1] "Gene-12" [1] "Gene-25" [1] "Gene-35" [ FAIL 0 | WARN 14 | SKIP 0 | PASS 4 ] > > proc.time() user system elapsed 10.21 0.89 11.07 |
fcoex.Rcheck/tests_x64/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(fcoex) Warning message: replacing previous import 'Matrix::head' by 'utils::head' when loading 'fcoex' > > test_check("fcoex") [1] 0.1 [1] "Number of features features = 40" [1] "Number of prospective features = 14" Round 1 [1] "first_prime round ( |s_prime| = 14 )" 0.1867632 0.1586357 Removed feature 13 0.1256985 0.1198729 Removed feature 38 0.1168656 0.1068907 Removed feature 18 0.2045022 0.09770198 Removed feature 34 0.1736622 0.08930267 Removed feature 32 Round 2 [1] "first_prime round ( |s_prime| = 9 )" 0.2161864 0.1610819 Removed feature 39 Round 3 [1] "first_prime round ( |s_prime| = 8 )" 0.128325 0.1124689 Removed feature 30 Round 4 [1] "first_prime round ( |s_prime| = 7 )" Round 5 [1] "first_prime round ( |s_prime| = 7 )" Round 6 [1] "first_prime round ( |s_prime| = 7 )" Round 7 [1] "first_prime round ( |s_prime| = 7 )" [1] "Number of final features = 7" [1] "Gene-1" [1] "Gene-40" [1] "Gene-28" [1] "Gene-39" [1] "Gene-13" [1] "Gene-26" [1] "Gene-12" [1] "Gene-25" [1] "Gene-38" [1] "Gene-35" [1] "Gene-30" [1] "Gene-18" [1] "Gene-34" [1] "Gene-32" [1] "Gene-1" [1] "Gene-40" [1] "Gene-28" [1] "Gene-26" [1] "Gene-12" [1] "Gene-25" [1] "Gene-35" [ FAIL 0 | WARN 14 | SKIP 0 | PASS 4 ] > > proc.time() user system elapsed 9.85 0.40 10.25 |
fcoex.Rcheck/examples_i386/fcoex-Ex.timings
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fcoex.Rcheck/examples_x64/fcoex-Ex.timings
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