Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:47 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the ProteoMM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ProteoMM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1451/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ProteoMM 1.10.0 (landing page) Yuliya V Karpievitch
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ProteoMM |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ProteoMM.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ProteoMM_1.10.0.tar.gz |
StartedAt: 2021-10-14 22:37:43 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:40:36 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 173.4 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ProteoMM.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ProteoMM.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ProteoMM_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/ProteoMM.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ProteoMM/DESCRIPTION’ ... OK * this is package ‘ProteoMM’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ProteoMM’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License components which are templates and need '+ file LICENSE': MIT * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed prot_level_multi_part 34.740 0.198 34.965 prot_level_multiMat_PresAbs 11.585 0.084 11.681 subset_proteins 11.269 0.117 11.399 peptideLevel_PresAbsDE 8.891 0.110 9.007 get_presAbs_prots 7.917 0.095 8.021 plot_volcano 7.158 0.052 7.215 MBimpute 6.896 0.163 7.063 plot_volcano_wLab 6.931 0.054 6.992 peptideLevel_DE 6.396 0.057 6.459 eig_norm1 5.100 0.057 5.161 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.13-bioc/meat/ProteoMM.Rcheck/00check.log’ for details.
ProteoMM.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ProteoMM ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘ProteoMM’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ProteoMM)
ProteoMM.Rcheck/ProteoMM-Ex.timings
name | user | system | elapsed | |
MBimpute | 6.896 | 0.163 | 7.063 | |
convert_log2 | 0.006 | 0.002 | 0.008 | |
eig_norm1 | 5.100 | 0.057 | 5.161 | |
eig_norm2 | 4.736 | 0.063 | 4.804 | |
eigen_pi | 0.020 | 0.004 | 0.024 | |
g.test | 0.003 | 0.001 | 0.004 | |
get_presAbs_prots | 7.917 | 0.095 | 8.021 | |
makeLMFormula | 0.001 | 0.001 | 0.001 | |
make_intencities | 0.007 | 0.003 | 0.010 | |
make_meta | 0.009 | 0.002 | 0.012 | |
peptideLevel_DE | 6.396 | 0.057 | 6.459 | |
peptideLevel_PresAbsDE | 8.891 | 0.110 | 9.007 | |
plot_3_pep_trends_NOfile | 4.718 | 0.040 | 4.761 | |
plot_volcano | 7.158 | 0.052 | 7.215 | |
plot_volcano_wLab | 6.931 | 0.054 | 6.992 | |
prot_level_multiMat_PresAbs | 11.585 | 0.084 | 11.681 | |
prot_level_multi_part | 34.740 | 0.198 | 34.965 | |
subset_proteins | 11.269 | 0.117 | 11.399 | |