Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:38 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the HiCBricks package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HiCBricks.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 856/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HiCBricks 1.10.0 (landing page) Koustav Pal
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: HiCBricks |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HiCBricks_1.10.0.tar.gz |
StartedAt: 2021-10-14 19:58:05 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 20:02:43 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 277.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HiCBricks.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings HiCBricks_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/HiCBricks.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HiCBricks/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HiCBricks’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HiCBricks’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed Brick_export_to_sparse 4.984 0.305 5.929 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
name | user | system | elapsed | |
BrickContainer_change_experiment_name | 1.912 | 0.116 | 2.422 | |
BrickContainer_change_output_directory | 1.447 | 0.089 | 1.537 | |
BrickContainer_get_path_to_file | 1.438 | 0.078 | 1.777 | |
BrickContainer_list_chromosomes | 1.411 | 0.077 | 1.996 | |
BrickContainer_list_experiment_name | 1.368 | 0.083 | 1.451 | |
BrickContainer_list_files | 1.402 | 0.086 | 1.573 | |
BrickContainer_list_output_directory | 1.452 | 0.084 | 2.257 | |
BrickContainer_list_resolutions | 1.408 | 0.082 | 1.491 | |
BrickContainer_unlink_resolution | 3.031 | 0.173 | 3.749 | |
Brick_add_ranges | 2.797 | 0.137 | 3.475 | |
Brick_call_compartments | 2.378 | 0.254 | 2.788 | |
Brick_export_to_sparse | 4.984 | 0.305 | 5.929 | |
Brick_fetch_range_index | 1.851 | 0.096 | 1.949 | |
Brick_fetch_row_vector | 2.731 | 0.219 | 3.600 | |
Brick_get_bintable | 1.524 | 0.091 | 1.617 | |
Brick_get_chrominfo | 1.302 | 0.076 | 1.380 | |
Brick_get_entire_matrix | 2.093 | 0.227 | 2.963 | |
Brick_get_matrix | 2.081 | 0.210 | 2.404 | |
Brick_get_matrix_mcols | 1.954 | 0.200 | 2.159 | |
Brick_get_matrix_within_coords | 3.065 | 0.209 | 3.914 | |
Brick_get_ranges | 1.506 | 0.086 | 1.594 | |
Brick_get_values_by_distance | 2.330 | 0.249 | 3.251 | |
Brick_get_vector_values | 2.092 | 0.203 | 2.296 | |
Brick_list_matrices | 1.395 | 0.081 | 1.478 | |
Brick_list_matrix_mcols | 1.425 | 0.075 | 2.150 | |
Brick_list_mcool_normalisations | 0.000 | 0.000 | 0.001 | |
Brick_list_mcool_resolutions | 0 | 0 | 0 | |
Brick_list_rangekeys | 1.332 | 0.072 | 1.406 | |
Brick_list_ranges_mcols | 1.328 | 0.079 | 1.408 | |
Brick_load_cis_matrix_till_distance | 1.774 | 0.163 | 1.939 | |
Brick_load_data_from_mcool | 0.000 | 0.000 | 0.001 | |
Brick_load_data_from_sparse | 0.000 | 0.001 | 0.000 | |
Brick_load_matrix | 1.791 | 0.171 | 2.006 | |
Brick_local_score_differentiator | 3.169 | 0.290 | 3.543 | |
Brick_make_ranges | 0.02 | 0.00 | 0.02 | |
Brick_matrix_dimensions | 1.962 | 0.210 | 2.265 | |
Brick_matrix_exists | 2.005 | 0.200 | 2.208 | |
Brick_matrix_filename | 1.957 | 0.190 | 2.148 | |
Brick_matrix_isdone | 1.974 | 0.195 | 2.172 | |
Brick_matrix_issparse | 1.913 | 0.185 | 2.101 | |
Brick_matrix_maxdist | 1.962 | 0.205 | 2.172 | |
Brick_matrix_minmax | 1.940 | 0.203 | 2.149 | |
Brick_mcool_normalisation_exists | 0.000 | 0.000 | 0.001 | |
Brick_rangekey_exists | 1.400 | 0.090 | 1.492 | |
Brick_return_region_position | 1.519 | 0.075 | 1.596 | |
Brick_vizart_plot_heatmap | 3.776 | 0.280 | 4.225 | |
Create_many_Bricks | 1.447 | 0.088 | 1.608 | |
Create_many_Bricks_from_mcool | 0.000 | 0.001 | 0.001 | |
load_BrickContainer | 1.418 | 0.080 | 1.499 | |